MmuEX1028357 @ mm10
Exon Skipping
Gene
ENSMUSG00000025821 | Zfp282
Description
zinc finger protein 282 [Source:MGI Symbol;Acc:MGI:2141413]
Coordinates
chr6:47877204-47890192:+
Coord C1 exon
chr6:47877204-47877836
Coord A exon
chr6:47880000-47880419
Coord C2 exon
chr6:47890066-47890192
Length
420 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTCCCTTGCATACAGGCT
3' ss Score
9.24
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTAACAGAAAGCAAGCCCCACTGTCCAGGCCGCAGCTTGGGACGTGAAGATCGACCACCCCAGCCAGACCTAGAGGCCGGCGGTCGCCGTCAGATTTCTTTGGGGGAGGCGGTGGCCCCCAGCCTGGAGTGGCCCCCGTCCAGCCCTGCAGGCGGGCAGGAGCTCCGAGGCCATTGGCTGGCGCGCCGGCTGCGAAGGGCGGGGAGCGCCACCGAAGGGGACTGTTTGCTCCTACGGGCTGTAGATGGAGCTGTCCGGCCCCGGCAAGGGGGAAGGCGCCTGGAAAACGTTCTTCTTCTCCCTGGCCGGCCCGAGCGGGGAACAGCACTCCCAGGATGCAGTTTGTGTCAACACGGCCGCAGCCTCAGCAGCTGGGCATCCAGGGTTTGGGGCTGGACAGCGGGAGCTGGAGCTGGGCCCAGGCTCTGCCCCCGGAGGAGGTCTGCCACCAGGAGCCGGCGCTACGCGCGGAAATGGCCGAGGGAATGCCGCCCATGCAG
Seq A exon
GCTCAAGAATGGGACATGGATGCCAGGAGACCAATGCCTTTTCAGTTCCCGCCCTTTCCAGATAGGGCCCCTGTCTTTCCTGACCGCATGATGCGTGAGCCCCAGTTGCCCACAGCAGAGATCTCGCTCTGGACCGTGGTGGCTGCCATTCAGGCTGTAGAGAGGAAGGTGGATGCCCAAGCTAGCCAGCTGCTGAACTTGGAGGGACGCACAGGCACAGCAGAGAAGAAGCTGGCTGACTGTGAGAAGACAGCTGTGGAGTTTGGTAACCACATGGAGAGCAAGTGGGCCGTGCTGGGGACCCTGCTGCAGGAGTACGGCCTGCTGCAACGTCGCCTGGAGAACCTGGAGAACCTGCTTCGCAACAGGAACTTCTGGGTCCTGCGGCTGCCCCCTGGCAGCAAGGGGGAGGCCCCCAAG
Seq C2 exon
GTCCCGGTGACCTTCGTCGACATTGCTGTCTACTTCTCTGAGGACGAATGGAAGAACTTGGACGAATGGCAGAAGGAGCTCTACAGCAATCTGGTGAAGGAGAACTACAAAACCCTGATGTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025821-'0-3,'0-1,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.691 A=0.257 C2=0.047
Domain overlap (PFAM):
C1:
NO
A:
PF124173=DUF3669=WD(100=57.1)
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGGGCTGTAGATGGAGCTG
R:
GAGCTCCTTCTGCCATTCGTC
Band lengths:
349-769
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types