RnoEX0101223 @ rn6
Exon Skipping
Gene
ENSRNOG00000026981 | Zfp282
Description
zinc finger protein 282 [Source:RGD Symbol;Acc:1306278]
Coordinates
chr4:77554269-77566087:+
Coord C1 exon
chr4:77554269-77554549
Coord A exon
chr4:77556722-77557141
Coord C2 exon
chr4:77565961-77566087
Length
420 bp
Sequences
Splice sites
3' ss Seq
CTGTCTTCCCTCGCACACAGGCT
3' ss Score
9.86
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
TACTGTTTGCTCCTACGGGCTGTAGATGGAGCTGTCCGGCCCCGGCAAGGGGGAAGGCGCCTGGAAAACGTTCTTCTTCTCCCTGGCCGGCCCGAGCGGGGAACAGCACTCCCAGGATGCAGTTTGTGTCAACACGGCCGCAGCCTCAGCAGCTGGGCATCCAGGGTCTGGGGCTGGACAGCGGGAGCTGGAGCTGGGCCCAGGCTCTGCCCCCGGAGGAGGTCTGCCATCAGGAGCCAGCGCTGCGCGCGGAAATGGCCGAGGGAATGCCGCCCATGCAG
Seq A exon
GCTCAAGAATGGGACATGGATGCCAGGAGACCAATGCCTTTTCAGTTCCCGCCCTTTCCAGATAGGGCCCCTGTCTTTCCAGACCGCATGATGCGTGAGCCCCAGTTGCCCACAGCAGAGATCTCGCTCTGGACCGTAGTGGCTGCCATTCAGGCTGTAGAGAGGAAGGTGGATGCCCAGGCTAGCCAGCTGCTGAACTTGGAGGGACGCACAGGCACAGCCGAGAAGAAGCTGGCTGACTGTGAGAAGACAGCTGTGGAGTTTGGTAACCACATGGAGAGCAAATGGGCCGTGCTGGGGACCCTGCTGCAGGAGTACGGGCTGCTCCAACGTCGGCTGGAGAACCTGGAGAACCTGCTTCGAAACAGGAACTTCTGGGTCCTGCGGCTGCCCCCTGGCAGCAAGGGGGAGGCCCCCAAG
Seq C2 exon
GTCCCAGTGACCTTCGTCGACATTGCTGTTTACTTCTCTGAGGACGAATGGAAGAACTTGGACGAATGGCAGAAGGAGCTCTACAGCAATCTGGTGAAGGAGAACTACAAAACCCTGATGTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026981_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.679 A=0.279 C2=0.036
Domain overlap (PFAM):
C1:
NO
A:
PF124173=DUF3669=WD(100=57.1)
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGGGCTGTAGATGGAGCTG
R:
GAGCTCCTTCTGCCATTCGTC
Band lengths:
349-769
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]