HsaEX6011144 @ hg19
Exon Skipping
Gene
ENSG00000170265 | ZNF282
Description
zinc finger protein 282 [Source:HGNC Symbol;Acc:13076]
Coordinates
chr7:148892554-148903914:+
Coord C1 exon
chr7:148892554-148892846
Coord A exon
chr7:148895425-148895844
Coord C2 exon
chr7:148903788-148903914
Length
420 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCCCTCTGCATACAGGCT
3' ss Score
9.76
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GCCGCCGAAGGGGACTGTTTGCTCCTACGGGCTGTAGATGGAGCTGTCCGGCCCCGGAGAGGGGGAAGGCGCCTGGAAAACGTTCTTCTTCTCCCTGGCCGACCCGAGCGGGGAACAGCACTCCCAGGATGCAGTTTGTGTCAACACGGCCGCAGCCTCAGCAGCTGGGCATCCAGGGCCTGGGGCTGGACAGCGGGAGCTGGAGCTGGGCCCAGGCTCTGCCCCCGGAGGAGGTCTGCCACCAGGAGCCGGCGCTGCGCGGGGAAATGGCCGAGGGAATGCCGCCCATGCAG
Seq A exon
GCTCAAGAATGGGACATGGACGCCCGGCGGCCAATGCCTTTTCAGTTCCCACCCTTTCCAGATAGGGCACCTGTCTTCCCCGACCGCATGATGCGAGAGCCCCAGTTGCCCACAGCAGAGATCTCACTCTGGACTGTGGTGGCTGCCATTCAGGCTGTGGAGAGGAAGGTGGATGCCCAGGCCAGCCAGCTGCTGAACCTGGAGGGGCGCACGGGGACAGCCGAGAAGAAGCTGGCCGACTGTGAAAAGACGGCCGTGGAATTTGGGAACCACATGGAGAGCAAGTGGGCCGTGCTGGGGACCCTGCTGCAGGAGTACGGGCTGCTGCAGAGGCGGCTGGAGAACTTGGAGAACTTGCTGCGCAACAGGAACTTCTGGGTCCTGCGGCTGCCCCCGGGCAGCAAGGGGGAGGCCCCCAAG
Seq C2 exon
GTTCCAGTGACTTTTGTCGACATTGCTGTGTACTTCTCCGAAGACGAGTGGAAGAACTTGGACGAATGGCAGAAGGAGCTTTATAACAACCTTGTTAAGGAGAACTACAAAACCCTCATGTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170265-'0-3,'0-0,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.691 A=0.231 C2=0.041
Domain overlap (PFAM):
C1:
NO
A:
PF124173=DUF3669=WD(100=57.1)
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGGGCTGTAGATGGAGCTG
R:
AAGCTCCTTCTGCCATTCGTC
Band lengths:
349-769
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)