GgaEX0006612 @ galGal3
Exon Skipping
Gene
ENSGALG00000004819 | ZNF767
Description
NA
Coordinates
chr2:414957-417033:+
Coord C1 exon
chr2:414957-414989
Coord A exon
chr2:415801-416243
Coord C2 exon
chr2:416907-417033
Length
443 bp
Sequences
Splice sites
3' ss Seq
GCTCTCCCTCCCACCCTTAGCAG
3' ss Score
6.64
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GAGGCGGTGGCGGCGGCTCCGGGCGCGGTGCAG
Seq A exon
CAGCTAAAGGATCCTGCAGGACACCGGGAGCAGAATAGCTGCCAGCCTCAGCCTCTTCGTTGGAGCGGGACATGGCCTCCGCGCTCCCCGGCAGCTGCCTCTGCTCATCCAGCCTCCCTCAAGCACCGGGCGAAGCCGTGCCAAGCAGCACCGCCAGCATCTCACTGTGGACAGTGGTGGCTGCTGTGCAGGCGGTGGAGAAGAGCGTAGAGGCCCACGCCTCCCGGCTGCTCAACCTTGAGCGCAGGACGGTGACCACTGAGAAAAAGTACTTGGACTGTGAAAAAACAGTGGTGGATTTTGGGAACCAGCTGGAGAGTAAGCTGACCGTACTGGGCACTCTCATCCGGGAGTACGGGCAGTTGCAGCGGCGTCTGGAGCACATGGAGAACCTGCTGAAGAACAGGAATTTTTGCATACTGCGCCTGCCCCCCGCCCCCAAG
Seq C2 exon
GGCCCGGAGGCGTCTGAAAGTGAAACTGCTTGCTTTGCTGAGCAAGAGTGGGAGAACCTGGAGGAATGGCAGAAGGAGCTGTACAGGAACATGCTGAGAGGGAACAGTGAATCTCTGAACTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004819-'0-3,'0-0,1-3
Average complexity
S
Mappability confidence:
83%=100=80%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.008 C2=0.232
Domain overlap (PFAM):
C1:
NA
A:
PF124173=DUF3669=WD(100=63.7)
C2:
PF0135222=KRAB=WD(100=81.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]