MmuEX0053291 @ mm10
Exon Skipping
Gene
ENSMUSG00000062519 | Zfp398
Description
zinc finger protein 398 [Source:MGI Symbol;Acc:MGI:1917856]
Coordinates
chr6:47835664-47859055:+
Coord C1 exon
chr6:47835664-47835920
Coord A exon
chr6:47840252-47840647
Coord C2 exon
chr6:47858929-47859055
Length
396 bp
Sequences
Splice sites
3' ss Seq
CATTTTTCCATTGCACATAGACT
3' ss Score
5.7
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
TGCAGTACTCGCTGCCCACAAAGCGCCAGCTGAGGGGCGGCTGCAGCCGGTGCGGCGTAGGCTGCTCGCTACTCAGCTCCTCTGCGTCCCAGCGCCCCCGGAAGCCCGATTGCCGCGCGAGTCCTGTCAGAGCGAGCAACGCGAGACCGCTTCTCGCCGTCTGCCGAGAGCACTGAGCAGCCGGGCCTGCGTGTGGTGGCGACTCCCGGGACAGGACCGGGCAGCGGAGGGCCATGGCTGAGGCGACCGCCGCTCCG
Seq A exon
ACTTCTGAATGGGACTCGGAATGCCTTACATCCCTGCAGCCCCTTCCTCTTCCTACACCTCCAGCAGCAAATGAGGCACATCTGCAGACTGCAGCCATTTCCCTGTGGACAGTGGTGGCTGCTGTGCAGGCCATAGAGAGGAAAGTGGAGGTCCACAGCCGGCGACTCCTCCATCTAGAAGGCAGGACAGGGACAGCAGAGAAGAAACTAGCAAGCTGTGAAAAGACAGTGGCAGAGCTTGGGAACCAGCTGGATGGCAAGTGGGCCGTGCTGGGGACCTTGCTGCAGGAGTATGGGCTGCTTCAGCGGCGGTTGGAGAACTTGGAGAACTTGTTGAGAAACAGGAACTTCTGGATCCTGCGGCTGCCCCCAGGTATTAAAGGAGATATCCCAAAG
Seq C2 exon
GTGCCTGTGGCCTTCGATGACGTCTCCATCTACTTTTCCACCCCAGAGTGGGAAAAATTAGAAGAATGGCAAAAGGAACTTTACAAGAATATCATGAAGGGCAACTACGAGTCTCTCATCTCCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062519_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.688 A=0.106 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF124173=DUF3669=WD(100=60.6)
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCACAAAGCGCCAG
R:
ACTCGTAGTTGCCCTTCATGA
Band lengths:
358-754
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types