BtaEX6029333 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020445 | ZNF398
Description
zinc finger protein 398 [Source:HGNC Symbol;Acc:HGNC:18373]
Coordinates
chr4:113049658-113060152:+
Coord C1 exon
chr4:113049658-113049905
Coord A exon
chr4:113053083-113053478
Coord C2 exon
chr4:113060026-113060152
Length
396 bp
Sequences
Splice sites
3' ss Seq
CATCTCCCCACTGCGCACAGACT
3' ss Score
5.14
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
CCAGCGAGTGGGGCCGAACCCGCCCGCCACCCGAGCTCCGCCGCACGGCCGCCCGCGTCTCCACCGCGTCCCCGCGTCCCGAGCAGGCCGGGCCCGACGGGCTAGCGAGAGCCCGGGCCGGGGAAGGCAGGGCCGGGCGCGCGCCGCCTGCGGAGAGGCCGGGGGGCCGGCCTGCGTGGGGCGGCGGCGGCGACTCCGGCTCCGGGCCGGACAGCGTAGGGGCCATGGCCGAGGCGGCCCCCGCTCCG
Seq A exon
ACTTCCGAATGGGATTCCGAATGCCTTACCTCCCTGCAGGCGCTCCCTCTTCCCGCAGCCCCAGCGGCAAATGAAGCTCACTTGCAGACCGCGGCCATCTCCCTGTGGACAGTGGTGGCGGCCGTGCAGGCCATTGAGAGAAAGGTGGAAGTCCACAGCCGGCGACTGCTGCACCTGGAGGGCCGGACGGGGACGGCAGAGAAGAAGCTGGCCAGCTGTGAGAAGACAGTGGCGGATCTCGGAAACCAGCTGGAGGGCAAGTGGGCTGTGCTGGGGACCCTGCTGCAGGAGTACGGGCTGCTGCAGAGGCGGCTAGAGAACTTGGAGAACCTGCTGAGGAACAGGAACTTCTGGATCCTGCGGCTGCCCCCGGGTATCAAAGGAGACATTCCAAAG
Seq C2 exon
GTGCCTGTGACATTCGATGATATCTCCATCTACTTTTCCACTCCAGAATGGGAAAAATTAGAAGAATGGCAAAAGGAACTTTACAAGAATATCATGAAGGGAAACTATGAGTCTCTCATCTCCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020445-'1-2,'1-0,5-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.875 A=0.008 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF124173=DUF3669=WD(100=60.6)
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACGGGCTAGCGAGAG
R:
TGAGAGACTCATAGTTTCCCTTCA
Band lengths:
273-669
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]