RnoEX0101359 @ rn6
Exon Skipping
Gene
ENSRNOG00000006703 | Zfp398
Description
zinc finger protein 398 [Source:RGD Symbol;Acc:1562129]
Coordinates
chr4:77519028-77535739:+
Coord C1 exon
chr4:77519028-77519281
Coord A exon
chr4:77523517-77523912
Coord C2 exon
chr4:77535613-77535739
Length
396 bp
Sequences
Splice sites
3' ss Seq
CATCTCTCCATTGCACATAGACT
3' ss Score
5.21
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
AGTACTCGCTGCCCACAAAGCGCCAGCTGAGGGGCGGCTGCAGCCGGTGCGGCGTAGGCTGCCAGCTACTCAGCTACTCAGCGTCCCAGCGTCCCCGGAAGCCGGATTGCCGCGCGAGTCCTGTCAGAGCGAGCACCGCGAGACCGCGTCTTGCTGTCTGCAGAGAGCACTGAGCGGCCGGGCCTGCGTGTGGTGGCGACTCCCGGGACAGGACCGGGCAGCGGAGGGCCATGGCTGAGGCGACCGCCGCTCCG
Seq A exon
ACTTCTGAATGGGACTCGGAATGCCTTACATCCCTGCAGCCCCTTCCTCTTCCTCCACCTCCAGCAGCAAATGAGGCACATCTGCAGACTGCAGCCATTTCCCTGTGGACAGTGGTGGCTGCTGTGCAGGCCATAGAGAGGAAGGTGGAAGTCCACAGCCGGCGACTCCTCCACCTAGAAGGCAGGACAGGGACAGCAGAGAAGAAACTAGCAGGCTGTGAAAAGACAGTGACAGAGCTTGGGAACCAGCTGGATGGCAAGTGGGCCGTGCTGGGGACCTTGCTGCAGGAGTATGGGCTGCTGCAGCGGCGGTTGGAGAACTTGGAGAACTTGTTGAGAAACAGGAACTTCTGGATCCTGCGGCTGCCCCCAGGTATTAAAGGAGATATCCCAAAG
Seq C2 exon
GTGCCTGTGGCATTTGATGATGTCTCCATCTACTTTTCCACTCCAGAGTGGGAAAAATTAGAAGAATGGCAAAAGGAACTTTACAAGAATATCATGAAGGGCAACTACGAGTCTCTCATCTCCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006703_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.875 A=0.167 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF124173=DUF3669=WD(100=60.6)
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCACAAAGCGCCAG
R:
ACTCGTAGTTGCCCTTCATGA
Band lengths:
358-754
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]