GgaEX0006612 @ galGal4
Exon Skipping
Gene
ENSGALG00000004819 | ZNF767
Description
zinc finger family member 767 [Source:RefSeq peptide;Acc:NP_001265069]
Coordinates
chr2:504467-506543:+
Coord C1 exon
chr2:504467-504499
Coord A exon
chr2:505311-505753
Coord C2 exon
chr2:506417-506543
Length
443 bp
Sequences
Splice sites
3' ss Seq
GCTCTCCCTCCCACCCTTAGCAG
3' ss Score
6.64
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GAGGCGGTGGCGGCGGCTCCGGGCGCGGTGCAG
Seq A exon
CAGCTAAAGGATCCTGCAGGACACCGGGAGCAGAATAGCTGCCAGCCTCAGCCTCTTCGTTGGAGCGGGACATGGCCTCCGCGCTCCCCGGCAGCTGCCTCTGCTCATCCAGCCTCCCTCAAGCACCGGGCGAAGCCGTGCCAAGCAGCACCGCCAGCATCTCACTGTGGACAGTGGTGGCTGCTGTGCAGGCGGTGGAGAAGAGCGTAGAGGCCCACGCCTCCCGGCTGCTCAACCTTGAGCGCAGGACGGTGACCACTGAGAAAAAGTACTTGGACTGTGAAAAAACAGTGGTGGATTTTGGGAACCAGCTGGAGAGTAAGCTGACCGTACTGGGCACTCTCATCCGGGAGTACGGGCAGTTGCAGCGGCGTCTGGAGCACATGGAGAACCTGCTGAAGAACAGGAATTTCTGCATACTGCGCCTGCCCCCCGCCCCCAAG
Seq C2 exon
GGCCCGGAGGCGTCTGAAAGTGAAACTGCTTGCTTTGCTGAGCAAGAGTGGGAGAACCTGGAGGAATGGCAGAAGGAGCTGTACAGGAACATGCTGAGAGGGAACAGTGAATCTCTGAACTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004819_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.008 C2=0.248
Domain overlap (PFAM):
C1:
NA
A:
PF124173=DUF3669=WD(100=63.7)
C2:
PF0135222=KRAB=WD(100=81.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]