HsaEX0073589 @ hg19
Exon Skipping
Gene
ENSG00000197024 | ZNF398
Description
zinc finger protein 398 [Source:HGNC Symbol;Acc:18373]
Coordinates
chr7:148844560-148863376:+
Coord C1 exon
chr7:148844560-148844858
Coord A exon
chr7:148851037-148851432
Coord C2 exon
chr7:148863250-148863376
Length
396 bp
Sequences
Splice sites
3' ss Seq
CATCTTTCCACTGCATGCAGACA
3' ss Score
5.95
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
AAAGCGCCAGCTGAGGGGCCGCTGCGGGTGGAGTGCGGCGGAGTCGGCCTCGCGACCCCAGCTTGATCCGCCGCCTGCTGCACCGCGCCTCCGCCGCGTTCCTGCGCGTCCCGAGCCCCGACGGCCGCGTGAGTCCCGTCCGTGCGGGGAAGGCAGGGCCGGGTCGGCGCCGCCTGTGGAGAGGACCCGGCGGCCGGGCCTGCTTGGAGCCGGGCGCGGTGGCAGCGGCGGCAGCGGCGGCGACTTCCGAGGCCCGGGCTAGACAGCGCAGGGCCATGGCTGAGGCGGCCCCGGCCCCG
Seq A exon
ACATCTGAATGGGACTCCGAGTGCCTTACATCCCTGCAGCCCCTTCCTCTTCCTACACCCCCAGCAGCAAATGAGGCACACCTGCAGACAGCAGCTATCTCTCTGTGGACAGTGGTGGCCGCCGTGCAGGCTATAGAGAGGAAGGTGGAGATCCACAGCCGGCGACTCCTACACCTGGAAGGTCGGACAGGGACAGCAGAGAAGAAACTAGCCAGCTGTGAAAAGACAGTTACCGAGCTTGGGAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGAACCCTGCTGCAGGAGTACGGGCTGCTGCAGAGGCGGCTGGAGAACTTGGAGAACCTGCTGCGCAACAGGAACTTCTGGATCCTGCGGCTCCCTCCAGGTATTAAGGGAGATATCCCAAAG
Seq C2 exon
GTGCCTGTGGCATTTGATGATGTCTCCATCTACTTTTCCACTCCAGAGTGGGAAAAATTAGAAGAATGGCAAAAGGAACTTTACAAGAATATCATGAAGGGCAACTACGAGTCTCTCATCTCCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197024-'6-12,'6-10,11-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.102 C2=0.119
Domain overlap (PFAM):
C1:
NO
A:
PF124173=DUF3669=WD(100=60.6)
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCCAGCTTGATCCGC
R:
ACTCGTAGTTGCCCTTCATGA
Band lengths:
358-754
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)