GgaEX1065610 @ galGal4
Exon Skipping
Gene
ENSGALG00000027143 | ZNF746
Description
zinc finger protein 746 [Source:HGNC Symbol;Acc:HGNC:21948]
Coordinates
chr2:482598-485159:+
Coord C1 exon
chr2:482598-483608
Coord A exon
chr2:483995-484291
Coord C2 exon
chr2:485033-485159
Length
297 bp
Sequences
Splice sites
3' ss Seq
CCCTTCTGTTCTCCTGCCAGGCT
3' ss Score
10.67
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
CGGGAGCTGAGGGGTGCCCGGTCCTGCTGTCATCCGCCCGTGGAACAGCTCCGCTCGGGACAGCTCTGGTGCCCTCCGTCTGTCCAGGTCCCCTCGGTGCGGTGCGGGGCTCACCTCGGGGTACAGCCGAGCAGAGGGGCCGGGAGGGCCGGGCTGGGCAACCCCTGCGCAGAGGGGACGGAACAGAGCTGTCACCGCACGCTGTCACCGCGGTGCAGAGCGCGCCCCGAGGTCCCGCCGCGCCACGTGAGCCACGCCCCCTGTCTAGACCACGCCCCCAAATGAGCTCAAACCACGCCCCCATTCGCAGATAACCACGCCCCCCTCGGCCAGGTAGGCCACGCCCCCTCCGCTCCTGCAGCCTGCAGGTGGCGCCCGATCCCCGCTCTCGGCCCCGCCCAAGCGGAGGGCGCCCCCTCGCGGCCCGGCGGAGCGCGGCGGCCTCAGGGCGCGCGGTGCCGGCGGCGGCGGCGGCCATGTCCTGCCCGGGCCTCGCTGAG
Seq A exon
GCTTCGTCGTGGAGCACGCGCACCCGCAGGGCCCGGGCGGCGCAGGCTGCGGGGCAGGGCGAGGCTCAGGCCCAGCAGCTGCGGGAGCTGTGGAGCCGCACCGAGAAGGCCGAGCGGCGGCTGTTGGCCTTCGAGAACCTGGTGGCAGAGCTGGGCAGCAACCTGGCAGCCCTGGGCAACCTGCTGCAGGACTACGGGCACCTCCAGCAGCGCCTGGACAATGTGGAGAACCTGCTGAAGAACAGGAACTTCTGGATCCTGCGGCTGCCCCCCGGCACCCGGGGTGAGGTGCCCAAG
Seq C2 exon
GTACCCATCACATTTGATGACATTGCCGTGTACTTCAACGAGCAGGAGTGGGAGAGACTGGACAGCTGGCAGAAGGATCTGTACAAAGCTGTGATGAGGGGTAACTACGAGACCCTGATCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027143-'0-1,'0-0,3-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.121 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCAAATGAGCTCAAACCA
R:
CAGATCCTTCTGCCAGCTGTC
Band lengths:
307-604
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]