MmuEX6004183 @ mm10
Exon Skipping
Gene
ENSMUSG00000068551 | Zfp467
Description
zinc finger protein 467 [Source:MGI Symbol;Acc:MGI:1916160]
Coordinates
chr6:48436613-48442738:-
Coord C1 exon
chr6:48442625-48442738
Coord A exon
chr6:48441947-48442060
Coord C2 exon
chr6:48436613-48439454
Length
114 bp
Sequences
Splice sites
3' ss Seq
GGCATCCTTTTCTCTTTTAGGGC
3' ss Score
11.57
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GATTCTCAGTGGGACAGCCAGAGATGGCTCCCCAGAGTGAGCCCAGGGATGGGTTCAGTAATGCCCAGGAGAAGATGTCATCCAGAGGAGAGAGCACACTGCACTCCTGCTCAG
Seq A exon
GGCATGAGACTCCTGGCCAGAAAGAAGGCATCCACACAGAACAAGCTGAAGCTCCTTGTATGGGCAGCCAGGCCAGTACCCCACAGAAGGCCGAACCTGCAGGCTCTGTCCCAG
Seq C2 exon
GGGAGGAATGGATGATTCGGAAGGTGAAGGTAGAGGATGAGGATCAGGAGGCAGAGGAGGAGGTGGAATGGCCCCAGCATCTCTCCTTCCTTCCCAGTCCTTTTCCCACTCCTGACTTGGGTCAGTTGGCTGTTACGTACAAACTGGAGCCAGGGACTCCGGGAGCACTAGGTGGAATCGCGCTGTCCGGGTGGGCCCCGATCCCTGAGAAGCCTTATGGCTGCGAGGAATGCGAGCGGCGTTTCCGGGATCAGCTAACTCTGCGGCTCCACCAGAGGTTGCACCGGGGTGAGGGTCCTTGTGCCTGCCCGGACTGTGGCCGCAGCTTCACGCAGCGTGCTCATATGCTCCTGCACCAACGCAGCCACCGCGGAGAGCGTCCCTTCCCGTGCTCAGAGTGCGACAAGCGCTTCAGCAAGAAGGCCCACCTGACCCGCCACCTGCGCACGCACACTGGCGAGCGTCCCTACCCGTGCGCTGAGTGCGGCAAACGCTTCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068551-'12-14,'12-9,13-14
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.974 C2=0.349
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF032269=Yippee-Mis18=WD(100=16.5),PF0009621=zf-C2H2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=5.1),PF0009621=zf-C2H2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=5.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAGGAGAGAGCACACTG
R:
TAAGGCTTCTCAGGGATCGGG
Band lengths:
251-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types