RnoEX0101426 @ rn6
Exon Skipping
Gene
ENSRNOG00000007707 | Zfp467
Description
zinc finger protein 467 [Source:RGD Symbol;Acc:1561603]
Coordinates
chr4:78067689-78074906:-
Coord C1 exon
chr4:78074618-78074906
Coord A exon
chr4:78073763-78073876
Coord C2 exon
chr4:78067689-78071500
Length
114 bp
Sequences
Splice sites
3' ss Seq
GGCATCCTCTTCTCTTTTAGGGC
3' ss Score
11.05
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TCCCTCAATTAAAAGGGCTGAGCTTAACGCCTGGCCAGACTGCTGAGAAGCTCTGTCTCTTATCCATGCAGACAAGAGATACCTTTCTTCCCAAACCAGCTGGGAAAATGCCCCATCTCTGATACCAGTCCAGTACTAGAATCTTCATTTGAACTCATTCCTCTGCCTCTAACAGGATTCTCAGTGGGACAGCCAGAGATGGCACCCCAAAGTGAGCCCAGGGATGGGTTCAGTAATCCCCAGGAGAAGATGTCATCTAGAGATGAGAGCACACTGCACTCATGCTCAG
Seq A exon
GGCCTGAGACCCCTGGCCAGAAAGAAGGTATCCACACAGAACAAGCTGAAGCTCCTTGTATGGGCAGCCAGGCCTGTATCCCACAGAAGGCCGAGCCTGCAAGCTCTGTCCCAG
Seq C2 exon
GGGAGGAATGGATGATTCGGAAAGTGAAGGTAGAGGATGAGGACCAGGAGGCAGAGGAGGAGGTGGAATGGCCCCAGCATCTCTCCTTCCTTCCCAGTCCTTTTCCTACTCCTGACTTGGGTCAGTTGGCTGTTGCATACAAACTGGAGCCAGGGACTCCGGGGACACTAGGTGGAATCGCGCTGTCCGGGTGGGCGCCGATCCCTGAAAAGCCTTATGGCTGCGAGGAATGCGAGCGGCGATTCCGGGACCAGCTAACTCTGCGGCTGCATCAGAGGTTGCACCGGGGTGAGGGTCCTTGTGCCTGCCCGGACTGTGGCCGCAGCTTCACGCAGCGTGCTCATATGCTTCTGCACCAACGCAGCCACCGCGGAGAGCGTCCCTTCCCGTGCTCAGAGTGCGATAAGCGTTTCAGCAAGAAAGCCCACCTGACCCGTCACCTGCGCACTCACACTGGCGAGCGTCCCTACCCGTGCGCCGAATGCGGCAAACGCTTCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007707-'6-8,'6-5,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.343
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF032269=Yippee-Mis18=WD(100=16.5),PF0009621=zf-C2H2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=5.1),PF0009621=zf-C2H2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=5.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGGCACCCCAAAGTGAG
R:
AGTCCCTGGCTCCAGTTTGTA
Band lengths:
252-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]