MmuEX6004964 @ mm9
Exon Skipping
Gene
ENSMUSG00000052861 | Dnahc6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:72983526-72987685:-
Coord C1 exon
chr6:72987539-72987685
Coord A exon
chr6:72985282-72985420
Coord C2 exon
chr6:72983526-72983645
Length
139 bp
Sequences
Splice sites
3' ss Seq
ATTTTCATTCTCCATTCTAGGAG
3' ss Score
10.93
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GTAACCAATGAGCCTCCAAAAGGCTTGCGTGCAAATATCAGGCGAGCCTTTACTGAAATGACACCTTCGTTTTTTGAAGAAAACATACTTGGAATGAAATGGAGAAAACTAATATTCGGCATTTGTTTCTTCCACGCAATTATTCAG
Seq A exon
GAGAGAAAGAAGTTTGGCCCCCTTGGCTGGAATATCTGCTATGAATTTAATGACAGTGATAGAGAATGTGCCTTACTGAACCTCAACCTTTACTGTCACGAAGGAAAGATCCCCTGGGACGCGCTAATTTACATTACTG
Seq C2 exon
GTGAGATCACCTACGGGGGGAGAGTGACAGACACCTGGGATCAGAGATGCCTTCGAACTGTCTTGAAAAGATTTTTCTCTCCTGAAACATTGGATGATGATTACACATACTCTGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-'69-70,'69-69,70-70=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.4=100)
A:
PF0302810=Dynein_heavy=FE(6.2=100)
C2:
PF0302810=Dynein_heavy=FE(5.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAAGGCTTGCGTGCAAAT
R:
GTCAGAGTATGTGTAATCATCATCCA
Band lengths:
248-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: