RnoEX0028561 @ rn6
Exon Skipping
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:100955253-100959687:-
Coord C1 exon
chr4:100959541-100959687
Coord A exon
chr4:100957878-100958016
Coord C2 exon
chr4:100955253-100955372
Length
139 bp
Sequences
Splice sites
3' ss Seq
GATATTTTCATCCTTTCTAGGAG
3' ss Score
9.6
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GTAACCAATGAGCCTCCAAAAGGCCTGCGTGCAAATATCAGACGAGCCTTTACTGAAATGACACCTTCGTTTTTTGAAGAAAATATACTTGGAATGAAATGGAGAAAACTAATATTCGGCATTTGTTTCTTCCACGCAATTATTCAG
Seq A exon
GAGAGGAAGAAGTTTGGCCCCCTGGGCTGGAATATCTGCTATGAGTTTAATGACAGTGACAGAGAATGTGCCTTACTGAACCTCAACCTCTACTGTCACGAAGGGAAGATCCCCTGGGATGCGCTAATTTACATCACTG
Seq C2 exon
GTGAGATCACCTATGGCGGGAGAGTGACAGACACCTGGGATCAGAGATGCCTTCGAACTGTCCTGAAAAGATTTTTCTCTCCCGAAACATTGGAGGATGAGTATACGTACTCTGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581-'70-75,'70-74,71-75
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.4=100)
A:
PF0302810=Dynein_heavy=FE(6.2=100)
C2:
PF0302810=Dynein_heavy=FE(5.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAACCAATGAGCCTCCAAAAG
R:
TCCTCCAATGTTTCGGGAGAGA
Band lengths:
244-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]