MmuEX6005993 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108438480-108443887:+
Coord C1 exon
chr6:108438480-108438602
Coord A exon
chr6:108439809-108439913
Coord C2 exon
chr6:108443695-108443887
Length
105 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTGCTTGTGGTCTAGTTG
3' ss Score
7.24
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTGGAAGTGATCAAGAAGGCCTACATGCAAGGTGAAGTGGAATTTGAGGATGGGGAGAACGGTGAGGATGGAGCTGCCTCACCCAGGAACGTGGGCCACAACATCTACATCCTCGCTCACCAG
Seq A exon
TTGGCTCGGCATAACAAAGAACTTCAAACCATGCTGAAACCTGGAGGCCAGGTGGATGGGGATGAAGCTCTGGAGTTCTACGCGAAGCACACAGCACAAATTGAG
Seq C2 exon
ATTGTCAGACTGGACCGGACAATGGAACAGATCGTCTTCCCTGTGCCCAGCATCTGTGAATTCCTGACTAAGGAATCGAAACTTCGAATATATTACACCACAGAGCGGGATGAGCAAGGTAGCAAGATCAATGACTTCTTCCTGCGCTCCGAGGACCTCTTTAACGAGATGAACTGGCAGAAGAAACTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'61-63,'61-61,62-63=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.317 A=0.149 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAGGATGGGGAGAACGGT
R:
GTTAAAGAGGTCCTCGGAGCG
Band lengths:
246-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: