DreEX0040330 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35571125-35575419:-
Coord C1 exon
chr11:35575285-35575419
Coord A exon
chr11:35573171-35573278
Coord C2 exon
chr11:35571125-35571356
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTTTTACATACACCCACAGCTA
3' ss Score
7.16
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GTGGAGGTGATCAAGAAGGCCTACATGCAGGGAGAAATCGAGGTAGAGCACACTGATGACGGAGAGAACGGTGAAGAAGAGCATGCCGCTTCTCCTCGTAATGTGGGTCACAACATCTATATCCTGGCGCATCAG
Seq A exon
CTAGCCAGACACAACAAGGAACTCCAGGCTATGCTGAAGCCAGGAGGGACGTATGGGGAGGGAGATGAAGCTTTGGAGTTCTACGCCAAACACACAGCTCAAATTGAG
Seq C2 exon
ATCGTCCGCCTGGATCGCACAATGGAACAGATTGTATTTCCCGTCCCCAACATTTGCGAATTCCTAACCCAGGAGTCCAAGCTTCGCGTCTATTACACCACAGAACGCGACGAGCAGGGCAGCAAGATCAATGACTTCTTCTTGCGCTCTGAAGACCTTTTTAATGAGATGAACTGGCAGAAGAAGCTGCGAGGTACTCAAGAGGCCACTGGTAACGCAAACTCCGTGCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-'57-56,'57-54,58-56
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=0.139 C2=0.047
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAAGGCCTACATGCAGGG
R:
ATTGATCTTGCTGCCCTGCTC
Band lengths:
256-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]