BtaEX6093965 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21674787-21679530:-
Coord C1 exon
chr22:21679408-21679530
Coord A exon
chr22:21677948-21678052
Coord C2 exon
chr22:21674787-21674979
Length
105 bp
Sequences
Splice sites
3' ss Seq
TGTCTGCACTTGTGTTCTAGTTG
3' ss Score
9.06
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
GTGGAAGTGATCAAGAAAGCCTACATGCAAGGTGAAGTGGAGTTCGAGGATGGTGAGAATGGTGAGGACGGAGCTGCCTCCCCCAGAAACGTGGGACACAACATCTACATCCTAGCTCATCAG
Seq A exon
TTGGCTCGACATAACAAAGAGCTTCAGACCATGCTGAAACCCGGCGGCCAGGTGGATGGAGACGAAGCTCTGGAGTTTTATGCCAAGCACACGGCCCAGATAGAG
Seq C2 exon
ATTGTCAGGTTAGACCGAACCATGGAGCAGATTGTCTTCCCCGTGCCCAGTATATGTGAATTCCTAACCAAAGAGTCAAAACTACGGATATACTACACCACAGAGAGGGACGAGCAGGGCAGCAAGATCAACGACTTCTTCCTGCGGTCCGAGGACCTCTTCAATGAGATGAATTGGCAGAAGAAGCTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'58-59,'58-57,59-59=AN
Average complexity
A_S
Mappability confidence:
89%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.317 A=0.200 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTACATGCAAGGTGAAGTG
R:
AAGTCGTTGATCTTGCTGCCC
Band lengths:
243-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]