MmuEX6005994 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108435237-108439913:+
Coord C1 exon
chr6:108435237-108435332
Coord A exon
chr6:108438480-108438602
Coord C2 exon
chr6:108439809-108439913
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCTCTTGTTCCTACCCAAAGGTG
3' ss Score
9.09
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
AACAATGCTTCGAAGCTGCTACTGGCCATCATGGAAAGCAGACACGATAGTGAAAATGCAGAGAGGATCCTGTACAACATGAGGCCCAAGGAGCTG
Seq A exon
GTGGAAGTGATCAAGAAGGCCTACATGCAAGGTGAAGTGGAATTTGAGGATGGGGAGAACGGTGAGGATGGAGCTGCCTCACCCAGGAACGTGGGCCACAACATCTACATCCTCGCTCACCAG
Seq C2 exon
TTGGCTCGGCATAACAAAGAACTTCAAACCATGCTGAAACCTGGAGGCCAGGTGGATGGGGATGAAGCTCTGGAGTTCTACGCGAAGCACACAGCACAAATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'59-61,'59-60,61-61=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.317 C2=0.149
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO


Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGAAGCTGCTACTGGCC
R:
CTCAATTTGTGCTGTGTGCTTCG
Band lengths:
194-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: