GgaEX1030857 @ galGal4
Exon Skipping
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18502983-18505047:+
Coord C1 exon
chr12:18502983-18503078
Coord A exon
chr12:18503806-18503928
Coord C2 exon
chr12:18504943-18505047
Length
123 bp
Sequences
Splice sites
3' ss Seq
GCATGTGGCTGTCTTTCCAGGTG
3' ss Score
8.96
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
AACAACGCTTCAAAGTTACTCTTGGCGATCATGGAGAGCAGGCACGACAGCGAGAACGCAGAAAGGATTCTCTACAACATGAGGCCCAAAGAGCTG
Seq A exon
GTGGAGGTGATAAAGAAGGCATATCTACAGGGCGAAGTAGAATTTGAGGACGGAGAGAATGGAGAAGATCTTGCAGCATCTCCTAGGAACGTGGGACACAACATTTATATATTAGCTCATCAG
Seq C2 exon
TTGGCTCGTCACAACAAAGAGCTGCAGAACATGCTGAAGCCAGGAGGTCAGATTGAGGGAGACGAGGCTCTGGAGTTCTATGCCAAGCACACGGCACAGATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'67-72,'67-71,68-72
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.195 C2=0.114
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTTCAAAGTTACTCTTGGCG
R:
CTCAATCTGTGCCGTGTGCTT
Band lengths:
196-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]