GgaEX1030857 @ galGal3
Exon Skipping
Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19147292-19149356:+
Coord C1 exon
chr12:19147292-19147387
Coord A exon
chr12:19148115-19148237
Coord C2 exon
chr12:19149252-19149356
Length
123 bp
Sequences
Splice sites
3' ss Seq
GCATGTGGCTGTCTTTCCAGGTG
3' ss Score
8.96
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
AACAACGCTTCAAAGTTACTCTTGGCGATCATGGAGAGCAGGCACGACAGCGAGAACGCAGAAAGGATTCTCTACAACATGAGGCCCAAAGAGCTG
Seq A exon
GTGGAGGTGATAAAGAAGGCATATCTACAGGGCGAAGTAGAATTTGAGGACGGAGAGAATGGAGAAGATCTTGCAGCATCTCCTAGGAACGTGGGACACAACATTTATATATTAGCTCATCAG
Seq C2 exon
TTGGCTCGTCACAACAAAGAGCTGCAGAACATGCTGAAGCCAGGAGGTCAGATTGAGGGAGACGAGGCTCTGGAGTTCTATGCCAAGCACACGGCACAGATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'56-59,'56-58,57-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.195 C2=0.114
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTTCAAAGTTACTCTTGGCG
R:
CTCAATCTGTGCCGTGTGCTT
Band lengths:
196-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]