MmuEX6006013 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108338179-108341963:+
Coord C1 exon
chr6:108338179-108338332
Coord A exon
chr6:108339361-108339548
Coord C2 exon
chr6:108341825-108341963
Length
188 bp
Sequences
Splice sites
3' ss Seq
TCTGACTTGGCCTTTTCTAGGCA
3' ss Score
8.26
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
GTTGTGAACTTAGCCAGGAATCTCATATACTTTGGTTTCTACAACTTTTCTGACCTTCTCCGATTAACCAAGATCCTCTTGGCAATCTTAGACTGTGTCCATGTGACCACTATCTTCCCCATTAGCAAGATGACAAAAGGAGAAGAGAATAAAG
Seq A exon
GCAGTAACGTGATGAGGTCTATCCATGGCGTTGGGGAGCTGATGACCCAGGTGGTGCTGCGGGGAGGAGGCTTCTTGCCCATGACTCCCATGGCTGCGGCCCCTGAAGGAAATGTGAAGCAGGCAGAGCCAGAGAAAGAGGACATCATGGTCATGGACACCAAGTTGAAGATCATTGAAATACTCCAG
Seq C2 exon
TTTATTTTGAATGTGAGATTGGATTATAGGATCTCCTGCCTCCTGTGTATATTTAAGCGAGAGTTTGATGAAAGCAATTCCCAGTCATCAGAAACATCCTCCGGAAACAGCAGCCAGGAAGGGCCAAGTAATGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'26-27,'26-26,28-27=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.161 C2=0.465
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACTTTTCTGACCTTCTCCGA
R:
CTGGCACATTACTTGGCCCTT
Band lengths:
253-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: