RnoEX6014537 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140421413-140425183:+
Coord C1 exon
chr4:140421413-140421566
Coord A exon
chr4:140422564-140422751
Coord C2 exon
chr4:140425045-140425183
Length
188 bp
Sequences
Splice sites
3' ss Seq
TCTGACTTGGCCTTTTCTAGGCA
3' ss Score
8.26
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GTTGTGAACTTAGCCAGGAACCTCATATACTTTGGCTTCTACAACTTTTCTGACCTTCTCCGATTAACCAAGATCCTCTTGGCAATCTTAGACTGTGTTCATGTGACAACCATCTTCCCCATTAGCAAGATGACGAAAGGCGAAGAGAATAAAG
Seq A exon
GCAGCAACGTGATGAGATCTATCCATGGAGTTGGGGAGCTCATGACCCAGGTGGTGCTTCGGGGAGGAGGCTTTTTGCCCATGACTCCTATGGCTGCTGCCCCTGAAGGAAATGTGAAGCAGGCAGAGCCAGAGAAAGAGGATATCATGGTCATGGACACCAAGTTAAAGATCATTGAAATACTCCAG
Seq C2 exon
TTTATTTTGAATGTGAGATTGGATTATAGGATCTCCTGCCTCCTGTGTATATTTAAGCGGGAGTTTGATGAAAGCAATTCCCAGTCATCAGAAACATCCTCCGGAAACAGCAGCCAAGAAGGGCCAAGTAATGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'39-38,'39-36,41-38=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.187 C2=0.468
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACTTAGCCAGGAACCTCA
R:
CGGAGGATGTTTCTGATGACTGG
Band lengths:
254-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]