GgaEX6010807 @ galGal3
Exon Skipping
Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19088359-19090377:+
Coord C1 exon
chr12:19088359-19088512
Coord A exon
chr12:19088825-19089012
Coord C2 exon
chr12:19090239-19090377
Length
188 bp
Sequences
Splice sites
3' ss Seq
GTTTACCTACCTCTGTGAAGGGA
3' ss Score
4.52
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
GTGGTTAACTTAGCCAGAAATCTGATATATTTTGGTTTCTACAACTTCTGTGACCTCCTCAGGCTGACCAAAATCCTCCTTGCTATATTAGACTGTGTGCACATCACTACCATCTTCCCTATTACCAAAATGGCAAAAGGCGAGGAAAGCAAAG
Seq A exon
GGAGCAATGTGATGAGATCAATCCATGGAGTCGGGGAGCTGATGACCCAGGTGGTGCTGAGAGGTGGGGGGTTCTTGCCCATGACCCCGCTTGCTGCTGCTCCTGAGGGCAATGTCAAGCAGACTGAGCCGGAGAAGGAGGACATCCTGGTGATGGATACGAAGCTGAAGATCATTGAAATACTTCAG
Seq C2 exon
TTCATTTTGAATGTGAGATTGGACTACAGAATCTCCTGCCTACTTTGTATATTTAAACACGAATTTGATGAAAGCAACGCCCAGATGTCTGAGTCACCCACTGGAAGCAGTAGTCAAGAAATGCCAGCAAATGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'24-27,'24-24,25-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.127 C2=0.404
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTGTGACCTCCTCAGGCT
R:
TGGTACATTTGCTGGCATTTCT
Band lengths:
248-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]