MmuEX6006021 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108327679-108331068:+
Coord C1 exon
chr6:108327679-108327839
Coord A exon
chr6:108328156-108328297
Coord C2 exon
chr6:108330910-108331068
Length
142 bp
Sequences
Splice sites
3' ss Seq
AGCAAGCTCTGTCTCTTAAGGTC
3' ss Score
4.9
5' ss Seq
CAGGTCGGT
5' ss Score
7.53
Exon sequences
Seq C1 exon
ATTGGTACCTCTCCCCTGAAGGAGGACAAGGAAGCATTTGCCATAGTTCCTGTTTCCCCTGCTGAGGTTCGGGACCTGGACTTTGCCAATGATGCCAGCAAGGTGCTGGGCTCCATCGCTGGGAAGTTGGAAAAGGGCACAATCACCCAGAATGAGAGAAG
Seq A exon
GTCTGTCACGAAGCTTTTGGAAGACTTGGTTTACTTTGTCACGGGTGGAACTAACTCTGGCCAAGACGTGCTTGAAGTTGTCTTCTCTAAGCCCAATCGAGAGCGGCAGAAGCTGATGAGGGAACAGAATATTCTCAAGCAG
Seq C2 exon
ATCTTCAAGCTGTTGCAGGCCCCCTTCACGGACTGCGGGGATGGCCCGATGCTTCGGCTGGAGGAGCTGGGGGATCAGCGCCATGCTCCTTTCAGACATATTTGCCGACTCTGCTACAGGGTCCTGCGACACTCACAGCAAGACTACAGGAAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'18-18,'18-17,19-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
PF0281514=MIR=PD(7.4=27.8)
A:
PF0136516=RYDR_ITPR=PU(22.3=95.8)
C2:
PF0136516=RYDR_ITPR=FE(25.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTGAAGGAGGACAAGGAA
R:
ATGTCTGAAAGGAGCATGGCG
Band lengths:
248-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: