Special

BtaEX6093941 @ bosTau6

Exon Skipping

Gene
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21799065-21801936:-
Coord C1 exon
chr22:21801776-21801936
Coord A exon
chr22:21800963-21801104
Coord C2 exon
chr22:21799065-21799223
Length
142 bp
Sequences
Splice sites
3' ss Seq
ATTGCTTCTTTCCTCCTAAGATC
3' ss Score
7.88
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
ATTGGCACTTCTCCCGTGAAGGAGGACAAGGAAGCCTTTGCCATAGTGCCAGTCTCTCCTGCTGAGGTTCGGGATCTGGACTTTGCCAATGACGCCAGCAAGGTGCTGGGCTCCATAGCGGGCAAGTTGGAGAAGGGCACCATCACCCAGAATGAAAGAAG
Seq A exon
ATCTGTAACCAAGCTGCTGGAAGACTTGGTTTACTTTGTCACTGGCGGAACCAATTCTGGTCAAGATGTTCTTGAAGTGGTCTTCTCCAAGCCCAACAGAGAGCGTCAGAAGCTCATGAGAGAACAGAATATTCTCAAGCAG
Seq C2 exon
ATCTTCAAGCTATTACAGGCCCCATTCACAGACTGTGGTGACGGCCCAATGCTGCGTCTGGAGGAGCTGGGAGACCAGCGGCACGCACCCTTCCGACACATCTGCCGCCTTTGCTACCGGGTCCTGAGACATTCCCAGCAGGACTACAGGAAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.056 A=0.021 C2=0.000
Domain overlap (PFAM):

C1:
PF0281514=MIR=PD(7.4=27.8)
A:
PF0136516=RYDR_ITPR=PU(22.3=95.8)
C2:
PF0136516=RYDR_ITPR=FE(25.2=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGTTCGGGATCTGGACT
R:
CTTCCTGTAGTCCTGCTGGGA
Band lengths:
253-395
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]