Special

GgaEX0012001 @ galGal3

Exon Skipping

Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19080077-19081592:+
Coord C1 exon
chr12:19080077-19080237
Coord A exon
chr12:19080944-19081085
Coord C2 exon
chr12:19081434-19081592
Length
142 bp
Sequences
Splice sites
3' ss Seq
AACTTGTGACTTTTCTGTAGATC
3' ss Score
6.69
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
Exon sequences
Seq C1 exon
ATTGGTACTTCTCCAGTAAAAGAGGACAAAGAAGCTTTTGCTATAGTACCAGTTTCTCCTGCAGAGGTTCGGGACTTGGACTTTGCAAACGATGCAAGTAAGGTCTTAGGTTCCATTGCTGGCAAACTGGAAAAGGGAACAATAACCCAGAATGAAAGACG
Seq A exon
ATCTGTTACCAAATTGTTGGAGGATTTGGTCTACTTTGTTACTGGTGGAACTAATTCTGGGCAAGACGTCCTTGAAGTGGTATTTTCTAAACCTAATAGAGAACGGCAAAAACTGATGAGAGAACAGAATATTCTAAAGCAG
Seq C2 exon
ATTTTCAAGTTGTTGCAAGCACCATTTACAGACAGCGGCGATGGCCCCATGCTGCGGTTGGAGGAGCTCGGAGACCAACGTCACGCTCCATTCAGACACATATGCCGGCTCTGCTACAGGGTGCTGAGGCATTCTCAGCAGGATTACAGGAAGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294_CASSETTE3
Average complexity
S
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.111 A=0.083 C2=0.038
Domain overlap (PFAM):

C1:
PF0281514=MIR=PD(7.4=27.8)
A:
PF0136516=RYDR_ITPR=PU(22.3=95.8)
C2:
PF0136516=RYDR_ITPR=FE(25.2=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGTTTCTCCTGCAGAGGT
R:
CCTCAGCACCCTGTAGCAGAG
Band lengths:
243-385
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]