MmuEX6006028 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108301987-108306277:+
Coord C1 exon
chr6:108301987-108302145
Coord A exon
chr6:108304601-108304699
Coord C2 exon
chr6:108306194-108306277
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGTTCCTCCTTCCTTTCCAGGTG
3' ss Score
14.03
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
CTCCTGCATTTGAAAAGCAATAAATACCTGACTGTGAATAAGAGGCTCCCAGCCTTGCTAGAGAAGAACGCCATGAGGGTGACGTTGGACGAGGCTGGAAATGAAGGGTCCTGGTTTTACATTCAACCATTCTACAAGCTTCGCTCCATCGGAGACAGT
Seq A exon
GTGGTCATAGGCGACAAGGTAGTTTTGAATCCTGTCAATGCTGGCCAGCCTCTACATGCCAGCAGTCATCAGCTGGTGGATAACCCAGGCTGCAATGAG
Seq C2 exon
GTCAACTCCGTCAACTGTAATACAAGCTGGAAGATAGTGCTTTTCATGAAATGGAGTGATAACAAAGACGATATTCTCAAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.121 C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(23.0=100)
A:
PF087096=Ins145_P3_rec=FE(14.2=100)
C2:
PF087096=Ins145_P3_rec=PD(11.2=71.4),PF0281514=MIR=PU(2.0=14.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAATAAGAGGCTCCCAGC
R:
AAGCACTATCTTCCAGCTTGT
Band lengths:
169-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: