DreEX0040327 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35708197-35713115:-
Coord C1 exon
chr11:35712957-35713115
Coord A exon
chr11:35708849-35708947
Coord C2 exon
chr11:35708197-35708280
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTTATTTTCTTCTCTTTCAGGTT
3' ss Score
13.12
5' ss Seq
GAGGTACAT
5' ss Score
6.75
Exon sequences
Seq C1 exon
CTGCTGCATTTAAAAAGCAATAAGTACCTGACGGTGAATAAACGCCTGCCGGCTCTGCTGGAGAAGAACGCCATGCGTGTGACGTTGGACTCGGCTGGAAATGAAGGATCCTGGTTTTACATCCAGCCCTTCTACAAGCTGCGCTCCATTGGAGATAGT
Seq A exon
GTTGTGATTGGGGACAAAGTAGTTTTGAATCCGGTAAACGCAGGACAGCCTCTCCACGCCAGCAGCCATCAGCTGGTGGACAATCCTGGCTGTAATGAG
Seq C2 exon
GTGAACTCGGTGAACTGCAACACGAGCTGGAAGATTGTTTTATTTATGAAGTGGAGCGACAACAAGGAGGCTATTCTTAAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-'5-7,'5-6,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.091 C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(23.0=100)
A:
PF087096=Ins145_P3_rec=FE(14.2=100)
C2:
PF087096=Ins145_P3_rec=PD(8.8=71.4),PF0281514=MIR=PU(1.9=14.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGACGGTGAATAAACGCC
R:
ATCTTCCAGCTCGTGTTGCAG
Band lengths:
169-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]