RnoEX0045383 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140375240-140379265:+
Coord C1 exon
chr4:140375240-140375398
Coord A exon
chr4:140377565-140377663
Coord C2 exon
chr4:140379182-140379265
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGTTGCTCCTTTCTTTCCAGGTG
3' ss Score
12.68
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
CTCCTACATTTGAAAAGCAATAAATACTTAACTGTGAATAAGAGGCTTCCTGCCCTGCTGGAGAAGAACGCCATGAGAGTGACGTTGGATGAGGCTGGAAATGAAGGGTCTTGGTTTTACATTCAGCCGTTCTACAAGCTCCGCTCCATCGGAGACAGT
Seq A exon
GTGGTCATAGGTGACAAGGTAGTTTTGAACCCTGTCAATGCTGGGCAGCCGCTACATGCCAGCAGCCATCAGCTGGTGGATAACCCGGGCTGCAATGAG
Seq C2 exon
GTCAACTCCGTCAACTGTAACACAAGCTGGAAAATAGTGCTTTTCATGAAATGGAGTGATAACAAAGATGACATTCTAAAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'21-14,'21-13,22-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.124 C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(25.7=100)
A:
PF087096=Ins145_P3_rec=PU(59.3=97.0)
C2:
PF087096=Ins145_P3_rec=PD(37.0=71.4),PF0281514=MIR=PU(2.0=14.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGAATAAGAGGCTTCCTGC
R:
AGCACTATTTTCCAGCTTGTGT
Band lengths:
170-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]