MmuEX6006488 @ mm10
Exon Skipping
Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118529843-118533466:-
Coord C1 exon
chr6:118533315-118533466
Coord A exon
chr6:118532202-118532369
Coord C2 exon
chr6:118529843-118529876
Length
168 bp
Sequences
Splice sites
3' ss Seq
AATGATTTGTTTTTAAATAGTGG
3' ss Score
5.32
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTTGAAGAAAAGAGAAAATACAAAAATAACGAAGCAGAACCCTCAGGAAATCTATACAGCGGTGCTGCTGACGGCGGTGCTGATGTAAAGCCACAGAGTGGAGACACTGAGAACCAGCAGTCTCCCCGGGAGGGGAGTGAGGGACGTGGCAG
Seq A exon
TGGTCCTGCCTTGCTTATGAAGGAAGCAAAGAAAATGGAAAATGAAAAATGGGTATCCAGAGAGCCCGCGAGGACGGCAATGAGTGAGCGCACCGGCTTACCAACTGGTGGCTGGCCACAAATGCAGGATGGTTCCTGCTGGAGTGACACGGACCAAAGTGAAGCCAG
Seq C2 exon
GCCCACAAAGAAAACATCTAGTAAACATAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827-'22-26,'22-24,23-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATACAAAAATAACGAAGCAGAACCC
R:
GTTTACTAGATGTTTTCTTTGTGGGC
Band lengths:
162-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types