RnoEX6014798 @ rn6
Exon Skipping
Gene
ENSRNOG00000006717 | Ankrd26
Description
ankyrin repeat domain 26 [Source:RGD Symbol;Acc:1310736]
Coordinates
chr4:150578534-150583596:-
Coord C1 exon
chr4:150583445-150583596
Coord A exon
chr4:150580045-150580212
Coord C2 exon
chr4:150578534-150578567
Length
168 bp
Sequences
Splice sites
3' ss Seq
AGATGTTTTTTTTTTAATAGTGG
3' ss Score
5.11
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTTGAAGAAAGGAGAAAGTACAGAAATAACGAAGCAGAGCCATCAGGCAATCTGTACGCCGGTGCGGCTGACTGCGCTGCTGACGGAAACCCACCGAGGGGAAACACGGATGACCTGCAGTTTCCCAGGAAGGGGAGTGAGGGACATGGCAG
Seq A exon
TGGTCCTACCTTGCTTATGAAGGAAGCAGAGAAAACGGAGAATGAGAAATGGGTATCTAAAGAGTCTGTTATGATGGCTGTGACTGAGAGCGCTGGCTTGCCGACTGGCGGCTCACTCCAAATGCAGGATGGTTCCCACCTGAGTGACTCGGACCAAAGTGAATCCAG
Seq C2 exon
GCCTGCAAAGAAAACATCTAATAAAAATAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006717-'27-24,'27-23,28-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGAAGAAAGGAGAAAGTACAGAA
R:
TTTTATTAGATGTTTTCTTTGCAGGC
Band lengths:
178-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]