MmuEX6006844 @ mm9
Exon Skipping
Gene
ENSMUSG00000008845 | Cd163
Description
CD163 antigen [Source:MGI Symbol;Acc:MGI:2135946]
Coordinates
chr6:124277916-124280545:+
Coord C1 exon
chr6:124277916-124278005
Coord A exon
chr6:124279063-124279115
Coord C2 exon
chr6:124279601-124280545
Length
53 bp
Sequences
Splice sites
3' ss Seq
CTATTTCTGGAATTAAAAAGGGG
3' ss Score
1.05
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TTTCCTCAAGAGGAGAGGTCTTGATACATCAAGTTCAGTACCAAGAGATGGATTCAAAGGCGGATGATCTGGACTTGCTGAAATCCTCGG
Seq A exon
GGGTCATTCAGAGGCACACTGAGAAGGAAAATGATAATTTATAATCCACTGAG
Seq C2 exon
GTTGGAGTTTAAGAAGCCTTGACAGGACAGCCAGCTAAATGGAACAAGAGCCCAGGCAACGCACGGATGACCACAGCTGCATCTTCATGCAGTCCTTTGTTTCCTGGAACTCTGCTGAACCTGCAAAAACCATATTTGTGAATGTGACCACTTAATAGAGATGGGAGACTTTTGAGGGAATTAAACAATATTGCTATTGGTTTGCTTGTTCGCAATAGGGTCTCATTATGTATAGCCCTGGAGATGGCGATAGAGAGCAGGCAAGCCTAGAATTCACAGAGATCTGCTTGTCTCTGCTTCCCAAATGCTGGGATCAAATATGTGGACCACCACATGTGGTTTAACAATTGTGTCTTGATTTTATAAATTTCTGGTTGGTTTTTCTGACGTTTTTAGGGTTTCGTGAATATAAAATAATGTCTTTTCGGTTGGCATGCTAATTTTTAAATATTATACACTTCCTTGTAGTGAGTTTAAGAATAATTTCTTATAACCAAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000008845-'14-16,'14-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.239 C2=0.000
Domain overlap (PFAM):
C1:
PF063657=CD34_antigen=FE(31.2=100)
A:
PF063657=CD34_antigen=PD(10.4=66.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACTTGCTGAAATCCTCGG
R:
TTGCAGGTTCAGCAGAGTTCC
Band lengths:
147-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: