MmuEX6006844 @ mm10
Exon Skipping
Gene
ENSMUSG00000008845 | Cd163
Description
CD163 antigen [Source:MGI Symbol;Acc:MGI:2135946]
Coordinates
chr6:124327898-124330527:+
Coord C1 exon
chr6:124327898-124327987
Coord A exon
chr6:124329045-124329097
Coord C2 exon
chr6:124329583-124330527
Length
53 bp
Sequences
Splice sites
3' ss Seq
CTATTTCTGGAATTAAAAAGGGG
3' ss Score
1.05
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TTTCCTCAAGAGGAGAGGTCTTGATACATCAAGTTCAGTACCAAGAGATGGATTCAAAGGCGGATGATCTGGACTTGCTGAAATCCTCGG
Seq A exon
GGGTCATTCAGAGGCACACTGAGAAGGAAAATGATAATTTATAATCCACTGAG
Seq C2 exon
GTTGGAGTTTAAGAAGCCTTGACAGGACAGCCAGCTAAATGGAACAAGAGCCCAGGCAACGCACGGATGACCACAGCTGCATCTTCATGCAGTCCTTTGTTTCCTGGAACTCTGCTGAACCTGCAAAAACCATATTTGTGAATGTGACCACTTAATAGAGATGGGAGACTTTTGAGGGAATTAAACAATATTGCTATTGGTTTGCTTGTTCGCAATAGGGTCTCATTATGTATAGCCCTGGAGATGGCGATAGAGAGCAGGCAAGCCTAGAATTCACAGAGATCTGCTTGTCTCTGCTTCCCAAATGCTGGGATCAAATATGTGGACCACCACATGTGGTTTAACAATTGTGTCTTGATTTTATAAATTTCTGGTTGGTTTTTCTGACGTTTTTAGGGTTTCGTGAATATAAAATAATGTCTTTTCGGTTGGCATGCTAATTTTTAAATATTATACACTTCCTTGTAGTGAGTTTAAGAATAATTTCTTATAACCAAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000008845-'17-20,'17-19,18-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.157 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACTTGCTGAAATCCTCGG
R:
TTGCAGGTTCAGCAGAGTTCC
Band lengths:
147-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types