HsaEX6064984 @ hg19
Exon Skipping
Gene
ENSG00000177575 | CD163
Description
CD163 molecule [Source:HGNC Symbol;Acc:1631]
Coordinates
chr12:7623414-7633852:-
Coord C1 exon
chr12:7633757-7633852
Coord A exon
chr12:7632456-7632509
Coord C2 exon
chr12:7623414-7623993
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTATTTCTGGAATGGAAAAGGAG
3' ss Score
-2.2
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TTTCCTCAAGAGGAGAGAACTTAGTCCACCAAATTCAATACCGGGAGATGAATTCTTGCCTGAATGCAGATGATCTGGACCTAATGAATTCCTCAG
Seq A exon
GAGGCCATTCTGAGCCACACTGAAAAGGAAAATGGGAATTTATAACCCAGTGAG
Seq C2 exon
TTCAGCCTTTAAGATACCTTGATGAAGACCTGGACTATTGAATGGAGCAGAAATTCACCTCTCTCACTGACTATTACAGTTGCATTTTTATGGAGTTCTTCTTCTCCTAGGATTCCTAAGACTGCTGCTGAATTTATAAAAATTAAGTTTGTGAATGTGACTACTTAGTGGTGTATATGAGACTTTCAAGGGAATTAAATAAATAAATAAGAATGTTATTGATTTGAGTTTGCTTTAATTACTTGTCCTTAATTCTATTAATTTCTAAATGGGCTTCCTAATTTTTTGTAGAGTTTCCTAGATGTATTATAATGTGTTTTATTTGACAGTGTTTCAATTTGCATATACAGTACTGTATATTTTTTCTTATTTGGTTTGAATAATTTTCCTATTACCAAATAAAAATAAATTTATTTTTACTTTAGTTTTTCTAAGACAGGAAAAGTTAATGATATTGAAGGGTCTGTAAATAATATATGGCTAACTTTATAAGGCATGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177575-'14-17,'14-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.397 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCACCAAATTCAATACCGGG
R:
AGAGAGGTGAATTTCTGCTCCA
Band lengths:
138-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)