RnoEX0018529 @ rn6
Exon Skipping
Gene
ENSRNOG00000010253 | Cd163
Description
CD163 molecule [Source:RGD Symbol;Acc:1310382]
Coordinates
chr4:156780935-156784869:+
Coord C1 exon
chr4:156780935-156781024
Coord A exon
chr4:156782105-156782131
Coord C2 exon
chr4:156784667-156784869
Length
27 bp
Sequences
Splice sites
3' ss Seq
CCTATTTCTGGAATAAAAAGGGG
3' ss Score
0.66
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TTTCCTCAAGAGGAGAGGTCTTGATACATCAAGTTCAGTACCAAGAGATGGATTCGAAGACGGATGATCTGGACTTGCTGAAATCCTCGG
Seq A exon
GGGGCCGATAATTCATAACCCACTGAG
Seq C2 exon
GTTGGCATTTAAGAAACCTTGACATGACAGCCAGCTAAATGGACAAGAGCCCAGTCCGTGCACGGATGACCACAGCTACATCTTCACGCTGTCCTTTGTTTGCTGGCACTCTACTGAACCTGCAGAAGCCATGTTTGTGAATGTGACCACTGAATAGATATGGGAGACTTTCAAGGGTATTAAATAAACGATATTGTTATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010253-'16-21,'16-20,17-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACTTGCTGAAATCCTCGG
R:
AGCAAACAAAGGACAGCGTGA
Band lengths:
125-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]