RnoALTA0007667-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000010253 | Cd163
Description
CD163 molecule [Source:RGD Symbol;Acc:1310382]
Coordinates
chr4:156780935-156782131:+
Coord C1 exon
chr4:156780935-156781024
Coord A exon
NA
Coord C2 exon
chr4:156782105-156782131
Length
0 bp
Sequences
Splice sites
5' ss Seq
CGGGTCAGT
5' ss Score
6.55
3' ss Seq
CCTATTTCTGGAATAAAAAGGGG
3' ss Score
0.66
Exon sequences
Seq C1 exon
TTTCCTCAAGAGGAGAGGTCTTGATACATCAAGTTCAGTACCAAGAGATGGATTCGAAGACGGATGATCTGGACTTGCTGAAATCCTCGG
Seq A exon
NA
Seq C2 exon
GGGGCCGATAATTCATAACCCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010253-16-20,16-19-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAGAGGTCTTGATACATCA
R:
TGGGTTATGAATTATCGGCCCC
Band lengths:
104-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]