RnoINT0031934 @ rn6
Intron Retention
Gene
ENSRNOG00000010253 | Cd163
Description
CD163 molecule [Source:RGD Symbol;Acc:1310382]
Coordinates
chr4:156780935-156785467:+
Coord C1 exon
chr4:156780935-156781024
Coord A exon
chr4:156781025-156784666
Coord C2 exon
chr4:156784667-156785467
Length
3642 bp
Sequences
Splice sites
5' ss Seq
CGGGTCAGT
5' ss Score
6.55
3' ss Seq
TTTTTGTACTTATGGGTTAGGTT
3' ss Score
6.39
Exon sequences
Seq C1 exon
TTTCCTCAAGAGGAGAGGTCTTGATACATCAAGTTCAGTACCAAGAGATGGATTCGAAGACGGATGATCTGGACTTGCTGAAATCCTCGG
Seq A exon
GTCAGTGAACTGTATAAAAATCTAAACCTTGGAATTTTAACAAGTGCCTGCAATTGACTCTGAGCATTCTACTTCGATTAATAGTTGAGAAAGTTCTGGAACTCTGTAATGGGAAGTTTGTGGTGCACAGGAAGAAAAAAAAAGGAGGGGCGGGATAAATGTCTCACAGCGAAAACATCAAGAAAGGCAGCTGTGAGCTGAAAATTATTCTTAGAGAACGCTTTGCAGCCACAAAGAAGTCTATGTAGCCTAAGAGGCTGATCACTGAAAGGGGTGCACCAACCCAACCACATACTATGGCTTGGACCTCGTTTTGCTGAAACAGAAATCGATTTTCTAAAAGACTGTTATGATGACTGTTTAAATTTTCTTTTCCTTCTCTTCTTAAAAATGATTTGGCTGTGTAAAATTGAGGTCTGCAACATGTTACAGAGAACACAGAGGCGCTATAAACATTACTAAACTAAAGCATGGGAGCATTTCCATAGTCTCACAGGAATCCTGCACGCAGCACAATGTTATCACTACTGCGCATGTGCTGCACAAAAGTGCGGCCATCCAGTCGCCTGTGCTCACCTTCTTCTTTGCATCCTCCCACCTGTGCCTTTTCCTTCAGAAGTCCACTCCCAGTCGCTATCCTTGAATTTTATTTTTATTATATTTTTTCTATAAGTCTAAAAGGTCAAGCTTCCTATACTCCATCTAATAAGACACCATAGAGCATTGCCCCCCAGGACCAGCCTTAGCTTTCATTCTAGAAGAAATGGCCTAGTACTCATTGTCCTCACTCCTCAGGAACCTTCTGAGAGGGACTTGCCTTGGTTCTTCAGTCTGTTGCTGCTGCTACGTCAGATGTGTATTTAAGGAATGGTGCTGGGCTTCTCAGCTCCCACCTTTTGGCTGCCAATTGGCGCCAGATTTTATAGGTTTAAAGAGCTTCTCAGACACTTGAGGCCAGGGCTGGCATATATTCCCAGTAATTACCTTCTTCCTTCCAGAAAATTCCAATGATTCGTATGATTTTAATGCTGATGGACTAACATCTTTGTCTAAATATCTTCCTATTTCTGGAATAAAAAGGGGGCCGATAATTCATAACCCACTGAGGTGAGTGAGAATTTACTCATCATGATTCAAAACAGGCACCCTCCTCTTAAGATAGGCAACCCCTTATATTAGAAAGAAAAGAATGCATATACATGTATGTTTCCAGATGGATGTACATATTTATAAATATGTATCTGTGTTCAAATATAGATCAACTATTTGTAAATATGACTCAACCATTGCTAAGATGTGTGTGCACATGCACTTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTGTGTATCTGCTTATCAAGAACATCCACAAGGCTAAGGAGAAGCAGGATAAGTAAATACTTTGAAATGTTACAGGGATCCTGTCAGGCAGTTAAAAACCTATGTATAATTTATGCTATGACAGAGATTATACAAGACACTACAAATGACAGAAAATCCATCTAAAAGATTTAGGAAGCATATAAGAAGATGTGGTATTTAAGTTAAACTTTAATTACGGTTGAAACATAAACCACTTCAGGGAAAGGGTATCATACATACAGACCATGGAGACAGAGATGACAGGTACACCTTGAGGAAACAGGCTTCCACTCGAATGAACACATCATACAGATTTATACTATGCTTCAGCAGACATGTTTGGAGTCACATTTTACAAACTGTCTTCCATGAAAAAAGTTCAACCAAAATTATAAAAACTTAGTAGGTGAAAAGGCTAGAAAAAAAATTATTAAGTTTTACATTTTTTAAAGATGGTAAGATGAGTTTGTAGGTACACTTTTCTGCTTTTTTTATTTAAGTAATTAAGGAATATAGTTTTACATAAGTTTTAATGAGACAAAGAGCAAAAATAGAACTCTTGGAAAGTTTATAAAGTATAAAGTGTTGGGCTGGGTGTCGCTTGCGGGCAGAGCGTTTGTTTAGTTTGTACCAGGTTCTGAGTTTAACACCAACTCTATAATGAAAAGAAAGACAAATACTCACACTGTGAAGTGTTAATATCCACAAAATATATGGAATTATATGTGTGTGCACATATGCATGAAGTTCTTAAAGTTTCTACAGTGCACAAACAGTGATTAGTGTTAATGCATATCTATGTACATTCTACATACATGCACATGTGTGTACAGTCTCTAAGGAACAGTTGAGCAAAGCTACATAAAGGCTTTTTTCACAAAATAAATTGAAATAAAAATCTGAAAGCACTGGAGAGATGACTCAATAGATAATGTGCCTGCCACACAGCGAGAGGACATCCTTAAATTCATATACCAGAACCATGTTAAAAAGCCATGAGACCAGCACTGGTGGAGACAGGCCTGTCCCTGAGACTCATTAGTGTCCAGCCCTAGCCAAATCAATAAGCTTCAGAATCAGTGCCTCAAAACACTTTGTGATGGAGAGAGTCGCAGGGAAGACACTTGGGTTTCCACACACATGTGCACCCACATGCACACACCCACACTAGCAAGTACTGACACAACTAATAAAAATAAACCAATAAATAGAATGAATGGAAAACTACTTCGTAATGAGATCTTGCTTCATATAAACCAGACTAGCAAACATTTAAAACAGCACCAGGACACATTACCAATGAGAACTGAAAGCGGCCATTTAAACCACTGCTGCTAGAAGACACACAACAGCCTCGAGAGAACAACCTACTGACCCCCGTTAGAGTGACACTGAAGTGACAGAGAGCTTTATAAATCCTCTCACTCCACCTGTGAACCTGTGCACATCCTGCCCATACAAGTAAAAATATTAAGACCTTTGTCAGACGGTGTCATTCCACACTGTTACTCGGGGCCAAAAAGTAGATAAATAAAAATAAAGCTAATGTCAACTGACAGCCCAATGGCTGGCAAACCTCTGGTGTAACTCTAAAGAGAGCAATCGTCCACAAATGTTAGCATGATCCTGCTCAAATAAAATGTTTGTATCAATGACTGAATACACTTCTGTATAGGTAGAAATACAATCTGAACTACATTATAGACAGGGATTCTGCAAACAAAAACTGACCCATAGCCTCAAAGTACATTAACATTCCTGATGTGACAGAGCCTTCTTACCCAGCAACCACCGTGAGACTGCTGCTGCAGGATCACAGGGGTGTGGCCTTTTGGAATGGCATCATTTTCTTTTCTTGGTTTGTTTTGTTTTGGTTTGGTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTGCTTTGTTTTGTTTGAGGCAGAGTGTTACACTGTAGTCTAGGCTAGCTTCACACTCACAATGTAGACCAGGCTGGTTTCACACTCAGAGCAATCCTCCTGTCCCAGCCTCATGAACTCTAGGCTCACAGGTGGCTCCACTATGTCTGACCTTTTTAAATGCCGTTCCTTGATATCACTGTCCCACCACGGAACAAAGTGATTTCCACGTACACCAAGGCTCAAATTTCTTTGCACTTAATTCTCTGCTCAGCGAAGGTAGTCTGTATTGTTATACAAATGAGTTTGGACATGCATGGTATAATATGATGCATGCTTCTGTGTGAAGACAGAAATGACCTTTTTGTACTTATGGGTTAG
Seq C2 exon
GTTGGCATTTAAGAAACCTTGACATGACAGCCAGCTAAATGGACAAGAGCCCAGTCCGTGCACGGATGACCACAGCTACATCTTCACGCTGTCCTTTGTTTGCTGGCACTCTACTGAACCTGCAGAAGCCATGTTTGTGAATGTGACCACTGAATAGATATGGGAGACTTTCAAGGGTATTAAATAAACGATATTGTTATTGATTTGACGTTGCTTCTTTGGTTCTTTGTTTTGTCTGCTTGTTTGGGACAGGGTCTCATTATTTAGCCCTAGTTGCCCTGGAGATGGCTATAGAAGGAAGGCAAGTCTAGAATTCACAGAGGTCTGCTTGTCTCTGATTCCCAAGTGCTGGGATTAAATATATGTGCCACTACATGTGGTTTAACCATTTTATCTCGATTTTATAAACTTCCGGTTGAAGTTTTGTGACCTTTTTAAGGTCTTTATGAAAAAAAATGATGTCTTTTCATTTGGCATGCTAATATTCAAATATTATACACTTCCTTTTAGTTGAGTTTAAGAATAATTTTCTTATAGCCAAGTCAAGTAAGCTCATTTTCACTTGGATTTTTTAATAAAGAAATACGGTCATCGGGACCACACGGCAGTTGTGACTGGCTGCATGAGGCCTTCAAAAAAATGCTTTAAAAAGAAAATAAAGGAGGGGGGCATGAGACGAGGAGAGGGGACTGGCTGAGAGGAGGTTTGGAGCAAGTGGAGGGAGATGAAACTCTAGTAGGGGAACTTATGTGATCATAGTGCATTGTGTTCAAATATGACATGACCTAAAGTGGAAAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010253:ENSRNOT00000068407:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]