MmuINT1006450 @ mm10
Intron Retention
Gene
ENSMUSG00000008845 | Cd163
Description
CD163 antigen [Source:MGI Symbol;Acc:MGI:2135946]
Coordinates
chr6:124329045-124330527:+
Coord C1 exon
chr6:124329045-124329097
Coord A exon
chr6:124329098-124329582
Coord C2 exon
chr6:124329583-124330527
Length
485 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TTTTTCTACTTGTGGGTTAGGTT
3' ss Score
7.52
Exon sequences
Seq C1 exon
GGGTCATTCAGAGGCACACTGAGAAGGAAAATGATAATTTATAATCCACTGAG
Seq A exon
GTGAGTGAGAATTTATTCATCACTATTCAAAACAGTCACACTCCTCTTGAGACAGACAACTCCTAGTGTATTAGAAAGAAAAGAATGCATATACGTGTATGTTTCCAGTTGAATGTATGTATGTGTATATGTTTATAAATATATATCTGTGTTTAGATATAGATCAACTCTTTGTAAATATGACTCAACCATTGCTAAGACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTCTGCTTATCAAGAACATCCATAAGACTAAGGAGAAGCAGGGTCAGTAAATAGTTTGAAATGTGACGGGATCCTGTCAGGCAGTTATAACATGTGTATAATTTATGCTATGATAAAGATTGTACAAGACATTACAAATGGCAGAAAATCCATCTAGAAGGTTTAGAGAGATTGTAAGAAGATGTCATGTTCTTCTATGTAAAGACAGAAATGACCTTTTTCTACTTGTGGGTTAG
Seq C2 exon
GTTGGAGTTTAAGAAGCCTTGACAGGACAGCCAGCTAAATGGAACAAGAGCCCAGGCAACGCACGGATGACCACAGCTGCATCTTCATGCAGTCCTTTGTTTCCTGGAACTCTGCTGAACCTGCAAAAACCATATTTGTGAATGTGACCACTTAATAGAGATGGGAGACTTTTGAGGGAATTAAACAATATTGCTATTGGTTTGCTTGTTCGCAATAGGGTCTCATTATGTATAGCCCTGGAGATGGCGATAGAGAGCAGGCAAGCCTAGAATTCACAGAGATCTGCTTGTCTCTGCTTCCCAAATGCTGGGATCAAATATGTGGACCACCACATGTGGTTTAACAATTGTGTCTTGATTTTATAAATTTCTGGTTGGTTTTTCTGACGTTTTTAGGGTTTCGTGAATATAAAATAATGTCTTTTCGGTTGGCATGCTAATTTTTAAATATTATACACTTCCTTGTAGTGAGTTTAAGAATAATTTCTTATAACCAAGTCAATTCATTTTCACTTTGAATTATTTAATAAAGGAATATGGTCATTGTGACCACACACACAGCAGTTGTGACCACCTGTATGAGGCCTTCAAAAAATATTTTAAAAATAGAGGGCTGGAGAAATGGCTCAGAGATCCTGAGTTCAATTCCTAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGAATCCGATGCCCTCTTCCAGTGTATCTGAAGATAGTGACACTGTCCTCATTAACATAAAATAAATAAATAAATCTTTAAAAAAAGAAAAGACAATAGAGGAGGGGAGGGGCGTGAGAGTAGGAGTGAGGACTGATTGAGAAGAAGGTTGGAGGAAGTGGGGGGAGGTGAAAAGCTAGTTGGGAACTTATGTGATCACAGTGCATCATGTCCAAATATGACATGTCCAAAAATGTTATTAATAAAGAAACGGAAAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000008845:ENSMUST00000032234:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.157 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGCACACTGAGAAGGAAA
R:
TGGGAAGCAGAGACAAGCAGA
Band lengths:
347-832
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types