MmuEX6007279 @ mm9
Exon Skipping
Gene
ENSMUSG00000030359 | Pzp
Description
pregnancy zone protein [Source:MGI Symbol;Acc:MGI:87854]
Coordinates
chr6:128444446-128445337:-
Coord C1 exon
chr6:128445211-128445337
Coord A exon
chr6:128444726-128444847
Coord C2 exon
chr6:128444446-128444497
Length
122 bp
Sequences
Splice sites
3' ss Seq
ATCAAAATTTTATCTCCCAGGGG
3' ss Score
7.78
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
ATCCGAGTGGACCTAGAGATTTCTCCTGATTTCCTGGCAGTCCCAGTGGGGGGCCATGAAAACTCTCATTGCATCTGTGGAAATGAAAGGAAAACCGTGTCCTGGGCTGTGACCCCAAAGTCGCTGG
Seq A exon
GGGAGGTGAACTTCACAGCTACCGCAGAAGCCTTGCAGTCTCCAGAATTGTGTGGCAATAAGTTGACAGAAGTGCCAGCCCTTGTACACAAGGACACTGTGGTGAAGTCCGTAATAGTTGAG
Seq C2 exon
CCTGAAGGAATTGAGAAGGAGCAAACGTACAACACACTGTTATGCCCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030359-'21-20,'21-19,22-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.056
Domain overlap (PFAM):
C1:
PF0020717=A2M=PD(4.4=9.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGAGTGGACCTAGAGATTTCT
R:
CTTGTGGGCATAACAGTGTGT
Band lengths:
178-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: