BtaEX6024078 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MI18]
Coordinates
chr5:101249002-101250086:+
Coord C1 exon
chr5:101249002-101249128
Coord A exon
chr5:101249330-101249451
Coord C2 exon
chr5:101250029-101250086
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTAAGAATTTTATTCCCCAGGAG
3' ss Score
7.23
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTGAGCATACAGCTGGAGGCCTCTTCTGCCTTCTTGGCCATCCCAGTAGAGAAGAATGAAGAATCTCAGTGTGTCTGTGGAAACAAGCAGAGAACCGTGTCCTGGGCTGTGACCCCAAAGTCACTGG
Seq A exon
GAGAGGTGAATTTCACAGCTACTGCAGAAGCCTTGCGGTCTCAGGAACTATGTGGCAATAAGGTGCCTCACTTCCCAGAAATTGGACAGAAGGACACCGTTATCAAGCCTTTACTAGTTGAG
Seq C2 exon
ACAAAGCCTGAAGGAATAGAAAGAGAAGAAACTTTCAACACACTTCTCTGTGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038461-'36-40,'36-38,37-40=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=PD(4.4=9.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGCTGGAGGCCTCTTCTG
R:
CACAGAGAAGTGTGTTGAAAGTT
Band lengths:
172-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]