RnoEX0071875 @ rn6
Exon Skipping
Gene
ENSRNOG00000006709 | Pzp
Description
pregnancy-zone protein [Source:RGD Symbol;Acc:628643]
Coordinates
chr4:161816743-161817629:-
Coord C1 exon
chr4:161817503-161817629
Coord A exon
chr4:161816999-161817120
Coord C2 exon
chr4:161816743-161816794
Length
122 bp
Sequences
Splice sites
3' ss Seq
ATCAAAATTTTTTCTCCCAGGGG
3' ss Score
7.81
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
ATCCATGTGAGCCTAGAGATGTCTCCTGATTTCCTGGCAGTCCCTGTGGGGAGCCATGAAGATTCTCATTGCATCTGTGGAAATGAAAGAAAAACCGTGTCCTGGGCTGTGACCCCAAAGTCGCTGG
Seq A exon
GGGAGGTGAACTTCACAGCTACTGCAGAAGCTTTGCAGTCTCCAGAACTGTGTGGCAATAAGGTGGCAGAAGTGCCAGCCCTTGTACAGAAGGACACTGTAGTGAAGCCCGTAATAGTCGAG
Seq C2 exon
CCTGAAGGAATTGAGAAGGAACAAACGTACAACACACTGTTATGCCCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006709-'23-29,'23-28,24-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.056
Domain overlap (PFAM):
C1:
PF0020717=A2M=PD(4.4=9.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATGTGAGCCTAGAGATGTCT
R:
CTTGTGGGCATAACAGTGTGT
Band lengths:
178-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]