MmuEX6009181 @ mm9
Exon Skipping
Gene
ENSMUSG00000040650 | Cyp2b23
Description
cytochrome P450, family 2, subfamily b, polypeptide 23 [Source:MGI Symbol;Acc:MGI:3646735]
Coordinates
chr7:27466334-27471456:-
Coord C1 exon
chr7:27471279-27471456
Coord A exon
chr7:27466616-27466778
Coord C2 exon
chr7:27466334-27466483
Length
163 bp
Sequences
Splice sites
3' ss Seq
TGGTACCTTTATGCTTGCAGCTT
3' ss Score
6.67
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
CAGGACCATGGAGCCCAGTGTCTTGCTCCTCCTTGCTCTCCTCACAGGCTTCTTGCTACTCTTGATTAGAGGCCAGCCAAAGGCATATAGCCGTCTTCCACCAGGACCCCGTCCCCTGCCCTTCTTGGGAAACCTCTTGCAGATGGACAGAGGAGGCCTCCTCAAGTCTTTTATTAAG
Seq A exon
CTTCGTGACAAACATGGCGATGTGTTCACAGTACACTTGGGACCAAGGCCCGTGGTCATGCTGTATGGGACAGAGACCATAAAGGAAGCTCTGGTGGACCATAGTGATGCTTTCTCTGGCCGGGGAGCAATTGCAGTGATTCAGCCAATTGTACAGGACTATG
Seq C2 exon
GTGTGATCTTTTCCAGTGGGGAACGTTGGAAGACCCTTCGGCGATTCTCTCTGGCCACCATGAGAGACTTTGGGATGGGAAAGCGGAGTGTGGAGGAGCGGATAAAGGAAGAGGCCCAATGTTTGGTGGAGGAACTAAAGAAATACGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040650-'1-2,'1-0,3-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(19.4=45.6)
A:
PF0006717=p450=FE(11.8=100)
C2:
PF0006717=p450=FE(10.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCTTGCTCCTCCTTGCTC
R:
CTCCGCTTTCCCATCCCAAAG
Band lengths:
249-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: