MmuEX6009181 @ mm10
Exon Skipping
Gene
ENSMUSG00000040650 | Cyp2b23
Description
cytochrome P450, family 2, subfamily b, polypeptide 23 [Source:MGI Symbol;Acc:MGI:3646735]
Coordinates
chr7:26681315-26686437:-
Coord C1 exon
chr7:26686260-26686437
Coord A exon
chr7:26681597-26681759
Coord C2 exon
chr7:26681315-26681464
Length
163 bp
Sequences
Splice sites
3' ss Seq
TGGTACCTTTATGCTTGCAGCTT
3' ss Score
6.67
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
CAGGACCATGGAGCCCAGTGTCTTGCTCCTCCTTGCTCTCCTCACAGGCTTCTTGCTACTCTTGATTAGAGGCCAGCCAAAGGCATATAGCCGTCTTCCACCAGGACCCCGTCCCCTGCCCTTCTTGGGAAACCTCTTGCAGATGGACAGAGGAGGCCTCCTCAAGTCTTTTATTAAG
Seq A exon
CTTCGTGACAAACATGGCGATGTGTTCACAGTACACTTGGGACCAAGGCCCGTGGTCATGCTGTATGGGACAGAGACCATAAAGGAAGCTCTGGTGGACCATAGTGATGCTTTCTCTGGCCGGGGAGCAATTGCAGTGATTCAGCCAATTGTACAGGACTATG
Seq C2 exon
GTGTGATCTTTTCCAGTGGGGAACGTTGGAAGACCCTTCGGCGATTCTCTCTGGCCACCATGAGAGACTTTGGGATGGGAAAGCGGAGTGTGGAGGAGCGGATAAAGGAAGAGGCCCAATGTTTGGTGGAGGAACTAAAGAAATACGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040650-'1-1,'1-0,2-1=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=45.6)
A:
PF0006717=p450=FE(11.8=100)
C2:
PF0006717=p450=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCTTGCTCCTCCTTGCTC
R:
CTCCGCTTTCCCATCCCAAAG
Band lengths:
249-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types