RnoEX0025829 @ rn6
Exon Skipping
Gene
ENSRNOG00000032004 | Cyp2b21
Description
cytochrome P450, family 2, subfamily b, polypeptide 21 [Source:RGD Symbol;Acc:735174]
Coordinates
chr1:83412033-83418777:-
Coord C1 exon
chr1:83418435-83418777
Coord A exon
chr1:83412325-83412487
Coord C2 exon
chr1:83412033-83412182
Length
163 bp
Sequences
Splice sites
3' ss Seq
GGTATCCTTACACTTGGCAGCTT
3' ss Score
2.21
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
TTAGTGAGCAGGTCACCAGCAGCCCAAACAGGAAGTATGCTATTCACACACCTGGACAATGAGAGACAGGGTGTGGAATAGCTGAAGTTGCATAAGTGAATGGTCAGACTGGTTCAGCATAAAAGATTCTGCTGGAGTGTGCAGTGAGGTGGACAGTGTTTAGTCCAGGACCATGGATCCCAGTGTCCTGCTCCTTTTTGCTCTTTTCACAGGCTTCTTGCTACTCTTGATCAGGGGCCAGGGAAACGGATATGGCCATCTTCCACCAGGACCCTGTCCCCTGCCCCTCTTGGGGAACGTTTTGCAAATGGACAGAAGAGGTCTCCTCAAGTCTTTTATTCAG
Seq A exon
CTTCGTGACAAATATGGAGATGTGGTTACAGTGCACTTGGGACCAAGGCCCATAGTCATGCTGTATGGGACCGAGACCATAAGGGAAGCTCTGGTGGACCATGCTGAGGCTTTCTCTGGCCGGGGAACAGTTGCTGTGGTTCAGCCAATTATACAGGACTATG
Seq C2 exon
GTATGATCTTTGCCAATGGGGAACGTTGGAAGATCCTTCGGCGATTCTCTCTAGCCACCATGAGAGACTTTGGGATGGGAAAGCGAAGTGTGGAGGAGAGGATAAAGGAGGAGGCCCAATGTTTGGTGGAGGAACTGAAGAAATACAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032004-'0-2,'0-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=45.6)
A:
PF0006717=p450=FE(11.8=100)
C2:
PF0006717=p450=FE(10.9=100)
Main Skipping Isoform:
ENSRNOT00000049175fB3800
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCAGTGTCCTGCTCCTTT
R:
CACTTCGCTTTCCCATCCCAA
Band lengths:
257-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]