MmuEX6009333 @ mm10
Exon Skipping
Gene
ENSMUSG00000047730 | Fcgbp
Description
Fc fragment of IgG binding protein [Source:MGI Symbol;Acc:MGI:2444336]
Coordinates
chr7:28071581-28085492:+
Coord C1 exon
chr7:28071581-28071637
Coord A exon
chr7:28075058-28075407
Coord C2 exon
chr7:28084922-28085492
Length
350 bp
Sequences
Splice sites
3' ss Seq
CAACTCTCTTCCCTCCACAGCTC
3' ss Score
10.83
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
ACATGGGATCCCCGTGGAAATGGTGGGCCCTGTGGGCCGGAGCAACCCTCCTGTGGG
Seq A exon
CTCTGCTCACCCCAGCAGAGGCATCCTGCCAAGGCATTCAGTGTGCATCTGGGCAGCGCTGCCAGATGGTGAGTGGGAAGGCCAGGTGTGTGGCAGAGTCCACAGCTGTCTGCCGTGCCCAGGGTGATCCCCACTATACCACCTTCGATGGCCGTCGGTATGACATGATGGGCACTTGTTCCTACACCATGGCTGAACTGTGTGGATCAGATGAGACCCTGCCAGCCTTCAGTGTGGAAGCCAAAAATGAACATCGGGGCAGCCGCCAAGTCTCCTATGTGGGCTTGGTCACAGTCTATGCCTACAGCCATTCTGTGTCGCTGGTTCGTGGGGAAATTGGCTTCGTTCGG
Seq C2 exon
ATCGACAATCAGCGCTCCCGCCTCCCTGCCTCTCTGAGTGAGGGTCGCCTACGTGTGCACAAAAGTGGAACACGAGGTGTGATAGAGATGGACTTTGGGCTGGTGGTCACCTATGACTGGGATGGCCAACTGACCCTGAGCCTGCCCAAGCGCTTCCAAGACCAAGTGTGCGGGCTGTGCGGCAACTATAATGGAGACCCTGCCGATGACTTCCTCACGCCTGACTTGGACCAGGCTCCCGATGCCTTGGAATTTGCAAATAGCTGGAAGCTGGATGATGGGGACTACCTGTGTGATGATGGCTGCCACAACTCTTGTCCCTCCTGCACCCCAGGGCAGACCCAACACTACAAGGGAGACCGTCTCTGTGGCATGCTAACTCTGTCCACAGGCCCCTTCTCTGCCTGCCATGAATTCCTGGACCCCAAGCCTTTCCTAGATGATTGTGTGTTTGACCTGTGTGTCACTGGAGGGGAGCGACTCAGCCTGTGCCGGAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047730-'3-5,'3-2,4-5=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.009 C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
PF0009420=VWD=PU(50.6=67.5)
C2:
PF0009420=VWD=PD(48.1=39.3),PF087426=C8=WD(100=39.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCCCCGTGGAAATGGTG
R:
AGGTAGTCCCCATCATCCAGC
Band lengths:
342-692
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types