HsaEX6095099 @ hg19
Exon Skipping
Gene
ENSG00000090920 | FCGBP
Description
Fc fragment of IgG binding protein [Source:HGNC Symbol;Acc:13572]
Coordinates
chr19:40423979-40434213:-
Coord C1 exon
chr19:40432966-40434213
Coord A exon
chr19:40430290-40430639
Coord C2 exon
chr19:40423979-40424549
Length
350 bp
Sequences
Splice sites
3' ss Seq
CCGTTCCCTTCCCTCCCCAGCTG
3' ss Score
11.32
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TGTGGCCAGCCAGGCCACAAAGCTGACCTACAACCATGGGGGTATCACTGGCTCCCGTGGGCTCCAGGCAGGTGATGTGGTAGAGTTTGAGGTCCGGCCATCCTGGCCACTCTACCTGTCTGCAAATGTGGGCATCCAGGTCCTGTTGTTTGGCACAGGTGCCATAAGGAATGAAGTGACTTATGACCCCTACCTGGTCCTGATCCCAGATGTGGCGGCCTACTGCCCAGCCTATGTGGTCAAGAGTGTACCAGGCTGTGAGGGCGTGGCCCTGGTAGTGGCACAGACGAAGGCTATCAGCGGGCTGACCATAGATGGGCATGCAGTGGGGGCCAAGCTCACCTGGGAGGCTGTGCCAGGCAGTGAGTTCTCGTATGCTGAAGTGGAGCTCGGCACAGCTGACATGATCCACACGGCCGAGGCCACCACCAACTTGGGACTGCTCACCTTCGGGCTGGCCAAGGCTATAGGCTACGCAACAGCTGCTGATTGCGGCCGGA
Seq A exon
CTGTACTGTCCCCAGTGGAGCCCTCCTGCGAAGGCATGCAGTGCGCAGCCGGGCAGCGCTGCCAGGTGGTAGGCGGGAAGGCCGGGTGTGTGGCGGAGTCCACCGCTGTCTGCCGCGCCCAGGGCGACCCCCATTACACCACCTTCGACGGCCGTCGCTACGACATGATGGGCACCTGTTCGTACACGATGGTGGAGCTGTGCAGCGAGGACGACACCCTGCCCGCCTTCAGCGTGGAGGCCAAGAACGAGCACCGGGGCAGCCGCCGCGTCTCCTACGTGGGCCTCGTCACTGTGCGCGCCTACAGCCACTCTGTGTCGCTGACCCGCGGTGAAGTTGGCTTCGTCCTG
Seq C2 exon
GTTGACAACCAGCGCTCGCGCCTGCCAGTCTCCCTGAGTGAGGGTCGCCTGCGTGTGTACCAGAGCGGACCACGGGCCGTGGTGGAGCTGGTCTTTGGGCTGGTGGTCACTTATGACTGGGACTGCCAGCTGGCACTCAGCCTGCCTGCACGCTTCCAAGACCAGGTGTGCGGGCTGTGTGGCAACTATAATGGTGACCCAGCAGACGACTTCCTCACGCCTGACGGGGCTCTGGCTCCTGACGCTGTGGAGTTCGCAAGTAGCTGGAAGCTGGATGATGGGGACTACCTGTGTGAGGATGGCTGCCAGAACAACTGTCCCGCCTGCACCCCAGGCCAGGCCCAACACTATGAGGGCGACCGACTCTGTGGCATGCTGACCAAGCTCGATGGCCCCTTCGCTGTCTGCCATGACACCCTGGACCCCAGGCCCTTCCTGGAGCAGTGTGTATATGACCTGTGTGTGGTCGGTGGGGAGCGGCTCAGCCTGTGCCGTGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000090920-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009420=VWD=PU(50.3=67.5)
C2:
PF0009420=VWD=PD(48.4=39.8),PF087426=C8=WD(100=39.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTAGTGGCACAGACGAAG
R:
TCATAAGTGACCACCAGCCCA
Band lengths:
345-695
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)