RnoEX6001878 @ rn6
Exon Skipping
Gene
ENSRNOG00000019129 | Fcgbp
Description
Fc fragment of IgG binding protein [Source:RGD Symbol;Acc:2313189]
Coordinates
chr1:85003575-85017239:+
Coord C1 exon
chr1:85003575-85003631
Coord A exon
chr1:85012677-85013029
Coord C2 exon
chr1:85016669-85017239
Length
353 bp
Sequences
Splice sites
3' ss Seq
CCAACTCTCTTCCTCCCCAGCTC
3' ss Score
8.83
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GCATGGGATCCCCATGGAGCTGGTGGGCCCTGTGGGCTGGAGCAATCCTCCTGTGGG
Seq A exon
CTCGGCTCACCCCAACAGAGGCTTCCTGCCAAGGTGTTGTTCAGTGTGCATCTGGGCAGCGCTGCCAGATGGTGAGTGGGAAGGCCAGGTGTGTGGCTGAGTCCACAGCTGTCTGCCGCGCCCAGGGTGATCCCCACTACACCACCTTCGATGGCCGTCGCTATGACATGATGGGCAGCTGTTCCTACACCATGGCTGAGCTGTGTGGATCAGATGAGACCCTGCCAGCCTTCAGTGTGGAAGCCAAAAATGAACATCGGGGCAGCCGCCAAGTCTCCTATGTGGGCCTGGTCACAGTGTATGCCTACAGCCATTCTGTGTCGATGGTTCGTGGGGAAACTGGCTTCATTCGG
Seq C2 exon
ATTGACAATCAGCGCTCCCGCCTCCCTGCCTCTCTGAGTGAGGGTCGCCTGCGTGTGTACCAGAGTGGAACACGGGGTATTATAGAGCTGGACTTTGGGCTGGTGATCAGCTATGACTGGGACTCCCAGCTGACCCTGAGCCTGCCCAAGCGCTTCCAAGACCAGGTGTGCGGGCTGTGTGGCAACTATAACGGAGACCCTGCTGATGACTTCCTCACGCCGGACTTGGAGCAGGCCCCCAATGCCTTGGAGTTTGCAAATAGCTGGAAGCTGGATGATGGGGACTACCTGTGTGATGATGGTTGCCACAACTCTTGTCCCTCCTGCACCCCGGGCCAGATGCAGCACTACAAGGGGGACCGTCTCTGTGGCATGCTAGCTCTGTCCACAGGCCCCTTCTCTGCCTGTCATGAACTCCTGGACCCCAAGCCTTTCCTGGAAGATTGTGTGTTTGACCTGTGTGTAACTGGAGGGGAGCGGCTCAGCCTGTGCCGGAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019129-'2-3,'2-1,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.010
Domain overlap (PFAM):
C1:
NO
A:
PF0009420=VWD=PU(50.3=66.9)
C2:
PF0009420=VWD=PD(48.4=39.8),PF087426=C8=WD(100=39.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCCCCATGGAGCTGGT
R:
AGGTAGTCCCCATCATCCAGC
Band lengths:
342-695
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]