DreEX6012676 @ danRer10
Exon Skipping
Gene
ENSDARG00000076830 | FCGBP (1 of 2)
Description
Fc fragment of IgG binding protein [Source:HGNC Symbol;Acc:HGNC:13572]
Coordinates
chr5:41242664-41244963:-
Coord C1 exon
chr5:41243790-41244963
Coord A exon
chr5:41243345-41243685
Coord C2 exon
chr5:41242664-41243237
Length
341 bp
Sequences
Splice sites
3' ss Seq
ACTTTCCTGTGTTTCCTAAGCCA
3' ss Score
6.06
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
GTCCTTAAGCATAGACACAGCTTTCGTGGTTGCCCCAGAGGACAACACTATTGTGTCCATTTTCGATAGTCGTATTTGGTTCCCCAAAAAAAGAAAATTAAATTCTGGAGAAGTTTTACCCATTGATTTAAGCAAAAATTCTAAGATCATTCAAAGTAGCAAAAATGTCATGGTAATGTATTTCAGTAGCAATTTTCCGAATGACGAGTTTCTAACCAATGTCATACCCACTTCTGAAATGTCAAAGTCATGGACCATTCACTCTCAAGATTACTATGATAACACGCTTGTTGTTGTTGCCGAAGCTGCATCAGCCTCAACTATTAGTGGCTCAATGAAGTGGAAAACATTCCCTGCAAACAATAAGTTTGTATGGGCTACCAAGTCAATTGGTTCGCAGAGAGGTCCCATCACCATTTCTGGTGATTCGCCCATGGCTGCTTATGCTTTTGGTGGAAAAATAAGGCATGGATATGCCACAACAGGAGTGTGTAACACTG
Seq A exon
CCATAACAACAACGCCGCCTCCACCAGACCCCTGTGAGACAATGAAGTGTCGTCAGCAGGAGGAGTGCAGGAAGGGTGTCTGTGTTGCCACTTCCACTGCTACTTGCCATGCAGTTGGCGATCCCCATTTCAAAACCTTTGATGGGAAACTATTTGACTTTCAGGGAACTTGCACATATGTCATGGTCAACAGTACAAAGACTCAAAAAGGCCTCATACCCTTCAGTATCTTGACGAAGAATAATCACCGGGGAAGCACACGGGTGGCGTATGTGAGGTCGGTTTCTGTGCTTGTGTACACTCACACAATTGTGGTTGGCAGCCAGAAAGGAGTAGTAGAG
Seq C2 exon
TTTGATGGTGAAAACACTTACCTGCCTTTGAGTATAGATGGTGGAAAAATAAAGGTGAATCAGAGAGGGCTGAATGTTATAATATCGACAGATTTTGGCTTAGAGGTGAAATATGACTGGAATATGATGTTGTACATCACCGCTCCAAGTAGCTATTTCCAGACTGTAGGTGGTCTTTGTGGAAACTATAATGGTGACAGACGAGATGAATATATCGATCCTAAAGGCAACACACTCTCCAGTATCATTGACTTTGCAAAAACCTGGAAGGTTCCAGATAATGATCTGTTTTGCAATGATGACTGTAATGGACAATGCCCAAGTTGCACTGTAAGTCTTCAGGAAGAGTACAAAAAAGAGTCAAACTGTGGTGTCATAGCCAAATCCGATGGGCCATTTGTTTTGTGCCACAACACTGTGGATCCGCGCATGTATGTAGATAATTGTGTATATGATGTCTGCATTAACAATGGGATCAGAAACTTCCTCTGCAACAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076830-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.123 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009420=VWD=PU(50.0=68.4)
C2:
PF0009420=VWD=PD(48.7=39.6),PF087426=C8=WD(100=40.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACAACAGGAGTGTGTAACA
R:
TGCAACTTGGGCATTGTCCAT
Band lengths:
353-694
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]