MmuEX6009341 @ mm10
Exon Skipping
Gene
ENSMUSG00000078776 | 9530053A07Rik
Description
RIKEN cDNA 9530053A07 gene [Source:MGI Symbol;Acc:MGI:2442118]
Coordinates
chr7:28130627-28137633:+
Coord C1 exon
chr7:28130627-28130727
Coord A exon
chr7:28131419-28131768
Coord C2 exon
chr7:28137063-28137633
Length
350 bp
Sequences
Splice sites
3' ss Seq
CAACTCTCTTCCCTCCACAGCTC
3' ss Score
10.83
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TTTGGGGCAGCCAAAGCCAGGAAGGCTCGGAGGTGGATGCTGCATACGTTAGGAAGGACATGGAAGCATAGGGAGAATTACTTCAACTGGTGCTCAGGAAG
Seq A exon
CTCTGCTCACCCCAGCAGAGGCATCCTGCCAAGGCATTCAGTGTGCACCTGGGCAGCGCTGCCAGATGGTGAGTGGGAAGGCTAAGTGTTTGGCAGAGTCCACAGCTGTCTGCCGTGCCCAGGGTGATCCCCACTATACCACCTTCGATGGCCATCGCTATGACATGATGGGCACCTGCACCTACACCATGGCTGAGCTGCGCAGCAGCAAGGACTCCCTGCTGGCCTTTAAAGTAGACGCCAAGAATGAGCACCGGAGCTCCAACAAAGTCTCCTACGTGCGCTTAGTCACTGTGCATGCCTACAACCACACCGTGTCCCTGATCTATGGAGAAGTTGGCCTTGCGAAG
Seq C2 exon
ATCGACTACCAGTACTCAAGCCTGCCGGTCTCCCTGAGTGAGGGTCTCTTGCGTGTGCACCAGAGTGGAACACGAGGTGTGCTAGAACTGGACTTTGGGCTGGTGGTCACCTATGACTGGGATGGCCAGCTGACCCTGAGCCTGCCCAAGCGCTTCCAAGACCAGGTGTCTGGGCTGTGCGGCAACTATAATGGAGACCCTGCAGATGACTTCCTCACGCCTGATGGGAAGCAAGCTCCTGATGTTCTAAATTTCACCAAAAGCTGGAAGGTGAATGATCAAGACCTCTTATGTGATGATGGCTGTTATGGCAACTGTCCGTCTTGCATCCCAAGCCAGGCCCAGCTCTTTAAGAAAGACCTTTTCTGTGGCATGCTAACTCTGCCCTCAGGCCCATTTGCTGACTGTCATCAATTTCTGGACCCCAAGCCTTTCCTGGAAGAATGTGTATATGACATGTGCGTGACGGGAGGGGAACGTCTCACCCTGTGCCGTGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078776-'5-11,'5-4,6-11
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.005
Domain overlap (PFAM):
C1:
NA
A:
PF0009420=VWD=PU(50.3=67.5)
C2:
PF0009420=VWD=PD(48.4=39.8),PF087426=C8=WD(100=39.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGAATTACTTCAACTGGTGCT
R:
GCAAGACGGACAGTTGCCATA
Band lengths:
358-708
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types