MmuEX6009341 @ mm9
Exon Skipping
Gene
ENSMUSG00000078776 | 9530053A07Rik
Description
RIKEN cDNA 9530053A07 gene [Source:MGI Symbol;Acc:MGI:2442118]
Coordinates
chr7:28914841-28922652:+
Coord C1 exon
chr7:28914841-28914897
Coord A exon
chr7:28916438-28916787
Coord C2 exon
chr7:28922082-28922652
Length
350 bp
Sequences
Splice sites
3' ss Seq
CAACTCTCTTCCCTCCACAGCTC
3' ss Score
10.83
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATATGGGATCCCTGTGGAGCTGTTGGGCACTCTGGGCTGGAGCAACCCTCCTATGGG
Seq A exon
CTCTGCTCACCCCAGCAGAGGCATCCTGCCAAGGCATTCAGTGTGCACCTGGGCAGCGCTGCCAGATGGTGAGTGGGAAGGCTAAGTGTTTGGCAGAGTCCACAGCTGTCTGCCGTGCCCAGGGTGATCCCCACTATACCACCTTCGATGGCCATCGCTATGACATGATGGGCACCTGCACCTACACCATGGCTGAGCTGCGCAGCAGCAAGGACTCCCTGCTGGCCTTTAAAGTAGACGCCAAGAATGAGCACCGGAGCTCCAACAAAGTCTCCTACGTGCGCTTAGTCACTGTGCATGCCTACAACCACACCGTGTCCCTGATCTATGGAGAAGTTGGCCTTGCGAAG
Seq C2 exon
ATCGACTACCAGTACTCAAGCCTGCCGGTCTCCCTGAGTGAGGGTCTCTTGCGTGTGCACCAGAGTGGAACACGAGGTGTGCTAGAACTGGACTTTGGGCTGGTGGTCACCTATGACTGGGATGGCCAGCTGACCCTGAGCCTGCCCAAGCGCTTCCAAGACCAGGTGTCTGGGCTGTGCGGCAACTATAATGGAGACCCTGCAGATGACTTCCTCACGCCTGATGGGAAGCAAGCTCCTGATGTTCTAAATTTCACCAAAAGCTGGAAGGTGAATGATCAAGACCTCTTATGTGATGATGGCTGTTATGGCAACTGTCCGTCTTGCATCCCAAGCCAGGCCCAGCTCTTTAAGAAAGACCTTTTCTGTGGCATGCTAACTCTGCCCTCAGGCCCATTTGCTGACTGTCATCAATTTCTGGACCCCAAGCCTTTCCTGGAAGAATGTGTATATGACATGTGCGTGACGGGAGGGGAACGTCTCACCCTGTGCCGTGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078776-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.005
Domain overlap (PFAM):
C1:
NO
A:
PF0009420=VWD=PU(50.3=67.5)
C2:
PF0009420=VWD=PD(48.4=39.8),PF087426=C8=WD(100=39.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCTGGGCTGGAGCAAC
R:
GCAAGACGGACAGTTGCCATA
Band lengths:
357-707
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: